Alignments for a candidate for argH in Billgrantia desiderata SP1

Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate WP_086511733.1 BZY95_RS20465 argininosuccinate lyase

Query= BRENDA::Q8DVX5
         (460 letters)



>NCBI__GCF_002151265.1:WP_086511733.1
          Length = 473

 Score =  459 bits (1181), Expect = e-134
 Identities = 232/459 (50%), Positives = 318/459 (69%)

Query: 2   TTKNHKLWGGRFEAGLAQWVEEFGASISFDQKLAEFDLKGSIAHVTMLGEKGIISQEDAA 61
           T   ++ WGGRF      +VE F AS+ FDQ+LA  D++GSIAH TML   G+++ ++  
Sbjct: 7   TPGTNQSWGGRFSEPTDAFVERFTASVGFDQRLALQDIQGSIAHATMLARVGVLTDDERD 66

Query: 62  TIKAGLEDLLEEYKAGQLKFDVSNEDIHMNMESLLTAKIGPVAGKLHTARSRNDQVATDM 121
            I AGL ++  E + G+ ++ V  ED+HMN+E+ LT KIG    KLHT RSRNDQVATD+
Sbjct: 67  AIVAGLTEIRGEIERGEFQWSVKLEDVHMNVEARLTDKIGITGKKLHTGRSRNDQVATDI 126

Query: 122 HLYLKAKLDEVIEKLANLRTVLVDLADKHVHTIMPGYTHLQHAQPISFGHHLMAYYNMFT 181
            L+L+ ++D V  +L  LR  L+ LA++   TIMPG+THLQ AQP++FGHHL+A+  M  
Sbjct: 127 RLFLRDEIDVVEAELGRLREGLIALAEREADTIMPGFTHLQTAQPVTFGHHLLAWQEMLA 186

Query: 182 RDSERFIFNVKHTDLSPLGAAALAGTTFPIDREMTAQLMGFAEPYSNSLDAVSDRDFILE 241
           RD ER +   K  ++ PLGAAALAGTT+PIDR +TA+L+GF  P  NSLDAVSDRDF +E
Sbjct: 187 RDHERLLDCRKRVNVMPLGAAALAGTTYPIDRHVTAELLGFERPAENSLDAVSDRDFAIE 246

Query: 242 FLSNASILMMHMSRMCEEVISWCSHEYQFVTLSDTFSTGSSIMPQKKNPDMAELIRGKSG 301
           F S ASIL+MH+SRM EE++ W S ++ F+ L D F TGSSIMPQKKNPD+ EL+RGK+G
Sbjct: 247 FASFASILLMHLSRMSEELVLWTSAQFDFIDLPDRFCTGSSIMPQKKNPDVPELVRGKTG 306

Query: 302 RVYANLFGLLTVMKALPLAYNKDLQEDKEGMFDTAETITVALDILAGMLSSMIVNDKHMA 361
           RVY +L GLLT+MK+ PLAYNKD QEDKE +FDT +T+   L   A M+ ++    + M 
Sbjct: 307 RVYGHLMGLLTLMKSQPLAYNKDNQEDKEPLFDTLDTVRDCLKAFADMVPAIEARKESMY 366

Query: 362 ESTQKDFSNATELADYLASKGMPFRQAHEIVGKLILECSKNGHYLQDVPLERYQTISDLI 421
           E+ ++ FS AT+LADYL  +G+ FR AHEIVG+ +    +    L ++ L+  +  SD+I
Sbjct: 367 EAARRGFSTATDLADYLVRRGVAFRDAHEIVGQSVAFGIREKKDLSEMSLDELRQFSDVI 426

Query: 422 EEDVYETLKSHTAVERRHSLGGTGFEQVKWQIAEAKKAL 460
           E DV+E L    +V  R+ +GGT  +QV+   + A++AL
Sbjct: 427 ESDVFEVLTLEGSVAARNHIGGTAPDQVRAAASRAREAL 465


Lambda     K      H
   0.318    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 597
Number of extensions: 22
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 473
Length adjustment: 33
Effective length of query: 427
Effective length of database: 440
Effective search space:   187880
Effective search space used:   187880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_086511733.1 BZY95_RS20465 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.21046.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21046.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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