Alignments for a candidate for carA in Billgrantia desiderata SP1

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_176342874.1 BZY95_RS13635 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_002151265.1:WP_176342874.1
          Length = 381

 Score =  530 bits (1365), Expect = e-155
 Identities = 260/382 (68%), Positives = 300/382 (78%), Gaps = 5/382 (1%)

Query: 1   MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 60
           M + A+L LEDG+ FHG AIGA G   GEVVFNT+MTGYQEILTD SY+RQIVTLTYPHI
Sbjct: 1   MSRPAILALEDGSVFHGTAIGADGQTSGEVVFNTAMTGYQEILTDLSYTRQIVTLTYPHI 60

Query: 61  GNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTR 120
           GN G N  D ES  + A GLVIRDLPLIASNFR+ + LS YLK  N++ IADIDTR+LTR
Sbjct: 61  GNTGVNAEDVESGSIAAAGLVIRDLPLIASNFRSEQSLSDYLKSQNVLGIADIDTRRLTR 120

Query: 121 LLREKGAQNGCIIAGDNPDAALALEKA----RAFPGLNGMDLAKEVTTAEAYSWTQGSWT 176
           +LR+KGAQNG I+AG   +   A+E+A    RAFPGL GMDLAKEV+  +AY W +  W 
Sbjct: 121 ILRDKGAQNGAILAGREAEGEDAVERALAAARAFPGLKGMDLAKEVSCKQAYEWNEAEWV 180

Query: 177 LTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGI 236
           L  G  +A    E PFHVV YD+G K NILRML  RGCRLT+VPAQT A DVL  NPDGI
Sbjct: 181 LGQGNVDASGS-ERPFHVVVYDYGVKYNILRMLASRGCRLTVVPAQTPASDVLARNPDGI 239

Query: 237 FLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHP 296
            L+NGPGDPAPCDYAI AIQ+ LETD+PVFGICLGHQLLALA+GAKTVKM  GHHG NHP
Sbjct: 240 LLANGPGDPAPCDYAIKAIQEILETDVPVFGICLGHQLLALAAGAKTVKMNHGHHGANHP 299

Query: 297 VKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEA 356
           V+D++   VMIT+QNHGFAVDEA+LP N+R  H+SLFDGTLQGI  TD+PAFSFQGHPEA
Sbjct: 300 VQDLDSGHVMITSQNHGFAVDEASLPGNVRAIHRSLFDGTLQGIELTDRPAFSFQGHPEA 359

Query: 357 SPGPHDAAPLFDHFIELIEQYR 378
           SPGP D +PLFD F+ ++ + R
Sbjct: 360 SPGPRDVSPLFDRFVTMMRERR 381


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 533
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 381
Length adjustment: 30
Effective length of query: 352
Effective length of database: 351
Effective search space:   123552
Effective search space used:   123552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_176342874.1 BZY95_RS13635 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.31658.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31658.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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