Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_086510467.1 BZY95_RS13630 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_002151265.1:WP_086510467.1
Length = 1076
Score = 1565 bits (4052), Expect = 0.0
Identities = 797/1073 (74%), Positives = 898/1073 (83%), Gaps = 4/1073 (0%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKRTDI SILI+GAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDP M
Sbjct: 1 MPKRTDINSILIIGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPVM 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADATYIEPI W+ V KIIE ERPDA+LPTMGGQTALNCAL L++ GVLE++GV MIGA A
Sbjct: 61 ADATYIEPITWQAVEKIIEAERPDAILPTMGGQTALNCALALDKHGVLEKYGVEMIGANA 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
D IDKAEDR RFD AMK IGLE R+ +AH+MEEA + A++GFP IIRPSFTMGGSGGG
Sbjct: 121 DTIDKAEDRDRFDKAMKNIGLECPRAKVAHSMEEAWEIQAELGFPVIIRPSFTMGGSGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
+AYN+EEFEEIC RG DLSPTKELLIDESL+GWKEYEMEVVRDKNDNCIIVC+IENFD M
Sbjct: 181 VAYNKEEFEEICDRGFDLSPTKELLIDESLLGWKEYEMEVVRDKNDNCIIVCAIENFDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPAQTLTDKEYQIMR+AS+AVLREIGVETGGSNVQF V+PK GR++VIEM
Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQIMRDASLAVLREIGVETGGSNVQFGVDPKTGRMVVIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAK+AAKLAVGYTLDEL NDITGGRTPASFEPSIDYVVTKIP
Sbjct: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELSNDITGGRTPASFEPSIDYVVTKIP 360
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
RF FEKF ANDRLTTQMKSVGEVMAIGRT QESLQKALRGLE G G DPKVS EA
Sbjct: 361 RFTFEKFPQANDRLTTQMKSVGEVMAIGRTFQESLQKALRGLETGNDGLDPKVSEFTEEA 420
Query: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
+ I+ EL+ AGA+RI+YIADA RAGLSV+ +F LTNID WFLVQ+EELVR+E VA+
Sbjct: 421 MQHIKGELQAAGAERIFYIADAMRAGLSVEEIFALTNIDPWFLVQLEELVRIEHDVAKRS 480
Query: 481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT 540
++ L+A L +LKRKGF+DARLAKL GV E E R+ R + + PVYKRVDTCAAEFA+DT
Sbjct: 481 LSELSAQELFRLKRKGFSDARLAKLLGVSEKEFRRTRQKAGIRPVYKRVDTCAAEFASDT 540
Query: 541 AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 600
AYMYSTYEEECEA S DR+KIMVLGGGPNRIGQGIEFDYCCVHA+ A+R+DGYETIMVN
Sbjct: 541 AYMYSTYEEECEAEVS-DRQKIMVLGGGPNRIGQGIEFDYCCVHAAFAMRDDGYETIMVN 599
Query: 601 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP 660
CNPETVSTDYDTSDRLYFEPVTLEDVLEI EKP GVIVQ+GGQTPLKLAR LEAAGVP
Sbjct: 600 CNPETVSTDYDTSDRLYFEPVTLEDVLEIADKEKPVGVIVQFGGQTPLKLARELEAAGVP 659
Query: 661 VIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720
+IGT+PDAIDRAEDRERFQ +++L LKQP NAT + + A KA+ IGYPLVVRPSYVL
Sbjct: 660 IIGTTPDAIDRAEDRERFQQMIDKLGLKQPPNATARSFDEAFAKAEAIGYPLVVRPSYVL 719
Query: 721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME 780
GGRAMEIVY +L Y AV VSND+PVLLDHFL+ A+E+D+DA+ DG V+IGGIM+
Sbjct: 720 GGRAMEIVYSADELENYMTHAVKVSNDSPVLLDHFLNAAIEIDIDAVSDGHEVVIGGIMQ 779
Query: 781 HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI 840
HIEQAGVHSGDSAC+LP Y+L E+QD MR+QV+++A EL V GLMNVQ A ++ E+Y+I
Sbjct: 780 HIEQAGVHSGDSACALPPYSLPAEVQDEMREQVKRMAVELGVVGLMNVQLAWQDGEIYVI 839
Query: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKF 900
EVNPRA+RT PFVSK G LA+VAAR MAGK+LAEQG T+E++P +YSVKE V PFNKF
Sbjct: 840 EVNPRASRTAPFVSKCIGTSLAQVAARCMAGKTLAEQGFTREIVPHFYSVKEAVFPFNKF 899
Query: 901 PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNS---TMKKHGRALLSVREGDKERV 957
PGVDP+L PEM+STGEVMG G TFAEAF KAQLG+ + +A LSVRE DK V
Sbjct: 900 PGVDPILSPEMKSTGEVMGSGETFAEAFYKAQLGAGEAIPALTGERKAFLSVREPDKAGV 959
Query: 958 VDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTT 1017
+++A LL GF L AT GTA L AG+ +VNKV+EGRPHI D +KN + YI+NTT
Sbjct: 960 IEIARSLLGLGFTLCATRGTAAALEAAGLEVEVVNKVYEGRPHIVDLLKNDDIAYIVNTT 1019
Query: 1018 SGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHA 1070
GR+AI DS VIRR+AL KV Y TTL G A MAL V +QE+HA
Sbjct: 1020 EGRQAINDSSVIRRTALARKVPYATTLAGASAVCMALEYGNEITVRRLQELHA 1072
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3228
Number of extensions: 146
Number of successful extensions: 13
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1076
Length adjustment: 45
Effective length of query: 1028
Effective length of database: 1031
Effective search space: 1059868
Effective search space used: 1059868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_086510467.1 BZY95_RS13630 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.25137.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25137.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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