Alignments for a candidate for gatA in Billgrantia desiderata SP1

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_086509865.1 BZY95_RS10430 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_002151265.1:WP_086509865.1
          Length = 486

 Score =  512 bits (1319), Expect = e-150
 Identities = 256/484 (52%), Positives = 345/484 (71%), Gaps = 4/484 (0%)

Query: 3   LFDHKITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEA- 61
           + D  + EL + +   +    +L      RI  +D ++ +F+ +  E+A A A   D A 
Sbjct: 1   MHDKTLAELTRSLDAGDFSSRELTQHLLGRIDRLDGELNSFITVTHEQALAAADAADAAR 60

Query: 62  VDGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGK 121
             GR+  G L G+P+ +KD   T+ ++TT  S++L++F   YDATVV++L+ A  V++GK
Sbjct: 61  AAGRA--GTLTGLPLALKDIFCTQDVKTTAGSRMLDSFIAPYDATVVEKLKAAGTVSLGK 118

Query: 122 LNMDEFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQ 181
            NMDEFAMGSS ENS Y   KNPW+   VPGGSSGGSAAAVAAG VP ++G+DTGGSIRQ
Sbjct: 119 TNMDEFAMGSSNENSHYGPVKNPWDFTAVPGGSSGGSAAAVAAGLVPAAIGTDTGGSIRQ 178

Query: 182 PASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSA 241
           PA+FCG+ GLKPTYGRVSRYG++A+ASSLDQ GP+ R+ ED A LL A++G D  DST  
Sbjct: 179 PAAFCGITGLKPTYGRVSRYGMIAYASSLDQAGPMARSAEDCALLLNAMAGHDLRDSTCV 238

Query: 242 NVDVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPH 301
              VPD+   L   + GLKI +P EY G+G+  +   +V  A+KV E LGA+  EVSLPH
Sbjct: 239 QRGVPDYTEELGTALSGLKIGLPSEYFGDGLDPQVEAAVREAIKVFESLGASVREVSLPH 298

Query: 302 SKYALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIML 361
           + YA+  YY+++ +EAS+NL+R+DG+R+G+R  N  +LIDLYK++RAEGFG+EVKRRI++
Sbjct: 299 THYAIPAYYVIAPAEASSNLSRYDGVRFGHRCANPVDLIDLYKRSRAEGFGDEVKRRILI 358

Query: 362 GTFALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTM 421
           GT  LS G++DAYYKKAQ+VR LI++DF D FE+ DV++GP +PTPAF +G N KDP+ M
Sbjct: 359 GTHTLSEGFFDAYYKKAQQVRRLIRQDFLDAFEEVDVLMGPASPTPAFDLGAN-KDPVQM 417

Query: 422 YANDILTIPVNLAGVPGISVPCGLADGLPLGLQIIGKHFDESTVYRVAHAFEQATDHHKA 481
           Y  DI TI +NLAG+PG+SVP G     P+GLQI+G HF ES +  VAH F+ ATD H+ 
Sbjct: 418 YLQDIYTIAINLAGIPGMSVPAGFVGKRPVGLQILGSHFTESRLLNVAHQFQLATDWHRQ 477

Query: 482 KPEL 485
           +P L
Sbjct: 478 RPAL 481


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 582
Number of extensions: 23
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 486
Length adjustment: 34
Effective length of query: 451
Effective length of database: 452
Effective search space:   203852
Effective search space used:   203852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_086509865.1 BZY95_RS10430 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.8549.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8549.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.