Alignments for a candidate for gatB in Billgrantia desiderata SP1

Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Asp/Glu-ADT subunit B; EC 6.3.5.- (characterized)
to candidate WP_086509866.1 BZY95_RS10435 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB

Query= SwissProt::Q9RF06
         (475 letters)



>NCBI__GCF_002151265.1:WP_086509866.1
          Length = 489

 Score =  448 bits (1152), Expect = e-130
 Identities = 233/486 (47%), Positives = 328/486 (67%), Gaps = 13/486 (2%)

Query: 1   MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAM 60
           M +ETVIGLEVHV+L T SK+FS +   FGAEPN+    +DL  PGVLPV+N+ AV  A+
Sbjct: 1   MQWETVIGLEVHVQLATRSKIFSGASTAFGAEPNTQACAVDLGLPGVLPVLNEAAVAMAV 60

Query: 61  RAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEV-DGETKRIGIT 119
           +  +A++ EI   S FDRKNYFYPD PK YQ SQ  QPI   G ++I + DG TK I + 
Sbjct: 61  KFGLAIHAEIPEVSVFDRKNYFYPDLPKGYQTSQMYQPIVGAGVVEITLEDGTTKPIRVH 120

Query: 120 RLHMEEDAGKSTH------KGE-YSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRS 172
             H+EEDAGKS H      KG   + +DLNR GTPL+EIVSEPD+RS KEA AYL+ + S
Sbjct: 121 HAHLEEDAGKSLHELFSSGKGHGMTGIDLNRAGTPLLEIVSEPDMRSAKEAAAYLKAIHS 180

Query: 173 IIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQE 232
           I+ Y G+SD  M EGS+RCD N+S+RP GQE FGT+AE+KN+NSF +V + + +E +RQ 
Sbjct: 181 IVTYLGISDGNMAEGSMRCDVNVSVRPKGQEAFGTRAEIKNVNSFRFVERAIAFEVERQI 240

Query: 233 EELLSGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTI 292
           E L  GG++ QETR FD    +T  MR KE ++DYRYFP PD++P+ +D A+ + +R  +
Sbjct: 241 ELLEDGGKVVQETRLFDPERDETRSMRTKEEANDYRYFPCPDLLPVVLDKAYIDHLRDNL 300

Query: 293 PELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYL 352
           PELP E++A++ NELGL AYDA VL+ T+EM+D+F+   E   D K  +NW+ G +   L
Sbjct: 301 PELPAEKRARFENELGLSAYDASVLSATREMADYFDEVREVCGDAKQAANWVQGELAGAL 360

Query: 353 NKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPEL-AAKGGNAKQIMEDNGLVQ 411
           N+  + + D+ ++   L  ++  + D T++ K AK+VF  L   +G +A  I+E  GL Q
Sbjct: 361 NRENLAIKDSPVSARQLGELVARVLDDTINGKAAKQVFQALWNGQGTSADDIIEAQGLKQ 420

Query: 412 ISDEATLLKFVNEALDNNEQSVEDYKNG----KGKAMGFLVGQIMKASKGQANPQLVNQL 467
           ++D   +   +++ + ++   V  Y++     +GK +G+ VGQ+MKAS+G ANPQ VN+L
Sbjct: 421 VTDTGAIEAMIDQVIADSPAQVAQYRDAEPDKRGKMIGYFVGQVMKASRGTANPQQVNEL 480

Query: 468 LKQELD 473
           LKQ+LD
Sbjct: 481 LKQKLD 486


Lambda     K      H
   0.313    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 623
Number of extensions: 30
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 489
Length adjustment: 34
Effective length of query: 441
Effective length of database: 455
Effective search space:   200655
Effective search space used:   200655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate WP_086509866.1 BZY95_RS10435 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.26229.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26229.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.