Alignments for a candidate for aroA in Billgrantia desiderata SP1

Align 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (characterized)
to candidate WP_086508940.1 BZY95_RS05305 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase

Query= BRENDA::Q83E11
         (438 letters)



>NCBI__GCF_002151265.1:WP_086508940.1
          Length = 760

 Score =  454 bits (1169), Expect = e-132
 Identities = 242/435 (55%), Positives = 305/435 (70%), Gaps = 7/435 (1%)

Query: 1   MDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMG 60
           + ++  P   ++G I VPGDKSISHR+++L A+AEG T+V GFL G D+LA + A ++MG
Sbjct: 315 LTFRAAPGGRVAGRIRVPGDKSISHRSIMLGALAEGVTEVKGFLEGEDSLATLQAFREMG 374

Query: 61  ASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSL 120
            +I+      +  V GVGM GL+AP   L  GN+GTA+RL +GLLAGQ F+T L GD+SL
Sbjct: 375 VAIEGPHQGRV-TVHGVGMHGLKAPAGPLYVGNAGTAMRLFAGLLAGQAFDTELIGDASL 433

Query: 121 QRRPMKRIIDPLTLMGAKIDST-GNVPPLKIYGNPRLTGIHYQLPMASAQVKSCLLLAGL 179
            +RPM R+ DPL LMGA+ID+  G  PPLKI+G  +L GI Y +PMASAQVKSCLLLAGL
Sbjct: 434 TKRPMGRVADPLRLMGARIDTAEGGRPPLKIHGGQKLEGITYDMPMASAQVKSCLLLAGL 493

Query: 180 YARGKTCITEPAPSRDHTERLLKHFHYTLQKDKQSICVSGGGKLKANDISIPGDISSAAF 239
           YA G+T + EPAP+RDHTER+L  F Y + ++  +  ++GGGKL A  I +P DISSA F
Sbjct: 494 YAEGETRVREPAPTRDHTERMLAGFGYEVHREGDTCWLNGGGKLSAAPIDVPSDISSATF 553

Query: 240 FIVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHAR 299
           F+VAA ITPGS + L  VG+NPTR+GVIN+LK+MGAD+ +T+  E   EP AD+ +R+A 
Sbjct: 554 FLVAAAITPGSNLLLEHVGINPTRIGVINILKLMGADLHLTNEREVGGEPVADLHIRYAP 613

Query: 300 LKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGI 359
           LKGIDIP DQVPL IDEFP L +AAA A G T LR A ELRVKE+DRI AM DGL  LG+
Sbjct: 614 LKGIDIPLDQVPLAIDEFPALFVAAACATGTTRLRGAEELRVKESDRIQAMADGLATLGV 673

Query: 360 AAESLPDGVIIQGG-----TLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTS 414
               L DG+ I G         GG ++S  DHRIAM+F VA   A   + I +C NV TS
Sbjct: 674 EHTVLEDGIDIVGAGDREVAYGGGRIDSLGDHRIAMSFVVASLRAGEEIVIDDCANVATS 733

Query: 415 FPNFVELANEVGMNV 429
           FP F ELA  VG+ V
Sbjct: 734 FPGFTELARTVGLRV 748


Lambda     K      H
   0.318    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 954
Number of extensions: 51
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 760
Length adjustment: 36
Effective length of query: 402
Effective length of database: 724
Effective search space:   291048
Effective search space used:   291048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_086508940.1 BZY95_RS05305 (bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase)
to HMM TIGR01356 (aroA: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.29377.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29377.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.