Alignments for a candidate for aroB in Billgrantia desiderata SP1

Align 3-dehydroquinate synthase, chloroplastic; EC 4.2.3.4 (characterized)
to candidate WP_086509303.1 BZY95_RS07350 3-dehydroquinate synthase

Query= SwissProt::Q8RU74
         (442 letters)



>NCBI__GCF_002151265.1:WP_086509303.1
          Length = 370

 Score =  391 bits (1004), Expect = e-113
 Identities = 201/368 (54%), Positives = 259/368 (70%), Gaps = 4/368 (1%)

Query: 74  SSQAPTVVEVDLGTRSYPIYIGAGLLDQPDLLQRHIHGKRVLVVTNTTVAPLYLDKTISA 133
           +S  P  ++V LG RSYPI+IGAGLL  P  L  ++ G++V++VTN  VAP YL++  + 
Sbjct: 6   TSIVPRTLQVALGERSYPIHIGAGLLGDPAWLTPYLAGRQVMIVTNEAVAPHYLERLKAG 65

Query: 134 LTDGNPNVTVESVILPDGEQFKNMETLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYA 193
           L     +  V  ++LPDGE  K + ++  V+D  +E+  +RRCT +ALGGGVIGDM G+A
Sbjct: 66  LPS---DAVVRELVLPDGEATKTLASVGLVWDALLEAGFNRRCTLIALGGGVIGDMVGFA 122

Query: 194 AASYLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLIDTDTLNTLP 253
           AA Y RGV FIQ+PTT+++QVDSSVGGKTG+NHPLGKNMIGAF+QP+ VLIDTDTL TLP
Sbjct: 123 AACYQRGVAFIQVPTTLLSQVDSSVGGKTGVNHPLGKNMIGAFWQPRAVLIDTDTLRTLP 182

Query: 254 DRELASGLAEVIKYGLIRDAEFFEWQEQNMPLLLARDPTAFTYAIKRSCENKADVVSQDE 313
            +EL++GLAEVIKYGLIRDAEF  W E  M  L A    A  +AI+RSC  KA++V++DE
Sbjct: 183 AKELSAGLAEVIKYGLIRDAEFLAWLEDEMTALRALQSEALAWAIERSCRLKAEIVAEDE 242

Query: 314 KESGVRATLNLGHTFGHAVETGVGYGQWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQ 373
            E GVRA LNLGHTFGHA+E   GYGQWLHGEAV  G +MA ++S RLGW++   V+R  
Sbjct: 243 TEQGVRALLNLGHTFGHAIEAHQGYGQWLHGEAVGVGMLMAAELSHRLGWLNAGDVERTA 302

Query: 374 KILQQAKLPTSPPETMTVEMFKSIMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALD 433
            I+  A LP   P  M VE F + M +DKK  D +LRLILL+ +LG  V      ++ L+
Sbjct: 303 SIIAAAGLPLEAPADMGVEDFLTRMRLDKKNVDERLRLILLE-ALGRAVIHDQTPRELLE 361

Query: 434 ETLRAFSK 441
           E L  F +
Sbjct: 362 ELLATFPR 369


Lambda     K      H
   0.318    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 392
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 370
Length adjustment: 31
Effective length of query: 411
Effective length of database: 339
Effective search space:   139329
Effective search space used:   139329
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_086509303.1 BZY95_RS07350 (3-dehydroquinate synthase)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.8155.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8155.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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