Alignments for a candidate for aroC in Billgrantia desiderata SP1

Align Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 (characterized)
to candidate WP_086511614.1 BZY95_RS19830 chorismate synthase

Query= SwissProt::P12008
         (361 letters)



>NCBI__GCF_002151265.1:WP_086511614.1
          Length = 361

 Score =  552 bits (1423), Expect = e-162
 Identities = 267/359 (74%), Positives = 309/359 (86%), Gaps = 1/359 (0%)

Query: 1   MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRR 60
           M+GNT G+LF VTTFGESHG ALG IVDG PPG+PL+EADLQHDLDRRRPGTSR+TTQRR
Sbjct: 1   MSGNTFGKLFTVTTFGESHGPALGAIVDGCPPGLPLSEADLQHDLDRRRPGTSRHTTQRR 60

Query: 61  EPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDY 120
           EPDQV+ILSGVFEGVTTGT IGLLIENTDQRS+DY  IKD FRP HADYTY  KYG+RDY
Sbjct: 61  EPDQVRILSGVFEGVTTGTPIGLLIENTDQRSKDYGNIKDQFRPAHADYTYHHKYGIRDY 120

Query: 121 RGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDIPLDIKDWSQVEQNPFFC 180
           RGGGRSSARETAMRVAAGAIAKKYLA + GI +RG ++Q+G + +  K W  V+ NPFFC
Sbjct: 121 RGGGRSSARETAMRVAAGAIAKKYLAGQ-GISVRGYMSQLGPLEIAFKQWESVDDNPFFC 179

Query: 181 PDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGLGEPVFDRLDADIAHALMSINAV 240
           PDP+++  L+  M  L+++ DS+GAK+TVVA G+P GLGEPVFDRLDAD+AHALMSINAV
Sbjct: 180 PDPERVPELEAFMDQLRRDQDSVGAKITVVAEGLPPGLGEPVFDRLDADLAHALMSINAV 239

Query: 241 KGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGILGGISSGQQIIAHMALKPTSSITV 300
           KGVEIGDGF  VA RGS++RDE+T +GF SNHAGG+LGGISSGQ +IAH+ALKPTSSIT+
Sbjct: 240 KGVEIGDGFAAVAQRGSEHRDEMTPEGFLSNHAGGVLGGISSGQPLIAHLALKPTSSITL 299

Query: 301 PGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHLLRQRAQNADVKTDIP 359
           PGR+I+  G  VE++TKGRHDPCVGIRA PIAEAM+A+ LMDHLLR RAQN DV+   P
Sbjct: 300 PGRSIDVHGNPVEVVTKGRHDPCVGIRATPIAEAMMALTLMDHLLRHRAQNGDVRVATP 358


Lambda     K      H
   0.319    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 487
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 361
Length adjustment: 29
Effective length of query: 332
Effective length of database: 332
Effective search space:   110224
Effective search space used:   110224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_086511614.1 BZY95_RS19830 (chorismate synthase)
to HMM TIGR00033 (aroC: chorismate synthase (EC 4.2.3.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.15288.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15288.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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