Alignments for a candidate for aroG in Billgrantia desiderata SP1

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate WP_086510254.1 BZY95_RS12485 3-deoxy-7-phosphoheptulonate synthase

Query= BRENDA::P00888
         (356 letters)



>NCBI__GCF_002151265.1:WP_086510254.1
          Length = 358

 Score =  435 bits (1119), Expect = e-127
 Identities = 213/355 (60%), Positives = 270/355 (76%), Gaps = 1/355 (0%)

Query: 1   MQKDALNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKSISDIIAGRDPRLLVVCG 60
           M    ++N+++  + VL+TPE LK   PL    E  + + R++I +I+ G DPRLLVV G
Sbjct: 1   MSDQQVSNLNVLSQDVLITPEALKNEIPLGDVAERTVIEGRRTIQNILDGSDPRLLVVVG 60

Query: 61  PCSIHDPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTTVGWKGLINDPHMDGSFDV 120
           PCSIHD + AL+YARR + LA EV DSL++VMRVYFEKPRTTVGWKGLINDPH++GSF++
Sbjct: 61  PCSIHDVDAALDYARRLRRLADEVKDSLFIVMRVYFEKPRTTVGWKGLINDPHLNGSFEI 120

Query: 121 EAGLQIARKLLLELVNMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGL 180
           E GL IARKLL+EL  +GLPLATEALDP SPQYL D  SWSAIGARTTESQTHREM+SGL
Sbjct: 121 EEGLHIARKLLVELSELGLPLATEALDPISPQYLQDCISWSAIGARTTESQTHREMSSGL 180

Query: 181 SMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQVALLQTQGNPDGHVILRGGKA- 239
           S PVGFKNGTDGSL  AINA+++ + PH F+GINQ+GQVA+++T+GN   HV+LRGG   
Sbjct: 181 SSPVGFKNGTDGSLDVAINALQSVSHPHNFLGINQSGQVAIIRTRGNAYAHVVLRGGNGK 240

Query: 240 PNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDYRRQPAVAESVVAQIKDGNRSIIG 299
           PNY    VA  E+E+++AG++P++M+DCSH NSNKD   QP V ++V  QI +GNRSI+G
Sbjct: 241 PNYDSVSVALAEQELKKAGIKPNIMIDCSHANSNKDPALQPLVLDNVTNQILEGNRSIMG 300

Query: 300 LMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWEMTDALLREIHQDLNGQLTAR 354
           LM+ESNI  G+Q      S+M+YGVSVTDACI W  T+  +  +   L+  LT R
Sbjct: 301 LMVESNIGWGSQKILDDHSQMQYGVSVTDACIDWATTEETMTRMASKLSPVLTER 355


Lambda     K      H
   0.316    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 442
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 358
Length adjustment: 29
Effective length of query: 327
Effective length of database: 329
Effective search space:   107583
Effective search space used:   107583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_086510254.1 BZY95_RS12485 (3-deoxy-7-phosphoheptulonate synthase)
to HMM TIGR00034 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.27641.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27641.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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