Alignments for a candidate for aroG in Billgrantia desiderata SP1

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate WP_275949223.1 BZY95_RS07485 3-deoxy-7-phosphoheptulonate synthase

Query= BRENDA::P00888
         (356 letters)



>NCBI__GCF_002151265.1:WP_275949223.1
          Length = 360

 Score =  338 bits (867), Expect = 1e-97
 Identities = 172/330 (52%), Positives = 221/330 (66%), Gaps = 3/330 (0%)

Query: 14  EQVLMTPEQLKAAFPLSLQQEAQIADSRKSISDIIAGRDPRLLVVCGPCSIHDPETALEY 73
           E  L TP +L+   PL+     ++A  R++I DI+ G D R+LVV GPCSIHDP  ALEY
Sbjct: 27  EMTLPTPGELRRRLPLAPPVTERLAAQRRAIRDIVTGCDDRMLVVVGPCSIHDPLAALEY 86

Query: 74  ARRFKALAAEVSDSLYLVMRVYFEKPRTTVGWKGLINDPHMDGSFDVEAGLQIARKLLLE 133
           ARR   LA  +SD L  VMRVY EKPRTTVGWKGL  DP +DGS D+  GL ++R ++ E
Sbjct: 87  ARRLAELAPRISDRLLPVMRVYVEKPRTTVGWKGLAYDPDLDGSGDMARGLHLSRHMMHE 146

Query: 134 LVNMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVGFKNGTDGS 193
           +  +GLP+ATE L P    Y  DL +W AIGARTTESQ HRE+ASGL   VGFKN T G 
Sbjct: 147 IAALGLPVATEVLQPMLASYFDDLLAWVAIGARTTESQLHRELASGLEAAVGFKNATSGD 206

Query: 194 LATAINAMRAAAQPHRFVGINQAGQVALLQTQGNPDGHVILRGG-KAPNYSPADVAQCEK 252
           +  A++A+RAAA PH+  G+++ G+ AL +T GN   HV+LRGG   PN+    VA+  +
Sbjct: 207 VGVAVDAIRAAAHPHQHFGLDEQGRPALRETTGNSYAHVVLRGGHHGPNHDSRSVAEARR 266

Query: 253 EMEQAGLRPSLMVDCSHGNSNKDYRRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQS 312
            +EQAGL   LMVDCSH N+ KD+RRQ  V   VV Q   G  +++GLM+ES++ EG Q 
Sbjct: 267 ALEQAGLPARLMVDCSHANARKDHRRQGEVLRDVVTQRVQGETALMGLMLESHLEEGRQ- 325

Query: 313 SEQPRSEMKYGVSVTDACISWEMTDALLRE 342
            E     ++YGVSVTD C+ W+ T+ALL E
Sbjct: 326 -ELAPGALRYGVSVTDPCLGWQATEALLLE 354


Lambda     K      H
   0.316    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 378
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 360
Length adjustment: 29
Effective length of query: 327
Effective length of database: 331
Effective search space:   108237
Effective search space used:   108237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_275949223.1 BZY95_RS07485 (3-deoxy-7-phosphoheptulonate synthase)
to HMM TIGR00034 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.11125.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11125.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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