Align Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 (characterized)
to candidate WP_086510693.1 BZY95_RS14880 glutamate--ammonia ligase
Query= SwissProt::Q3V5W6
(468 letters)
>NCBI__GCF_002151265.1:WP_086510693.1
Length = 468
Score = 731 bits (1888), Expect = 0.0
Identities = 345/467 (73%), Positives = 405/467 (86%), Gaps = 1/467 (0%)
Query: 2 SKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDALEDDFFEVGKMFDGSSIAGWKGIE 61
+K++ LI++HDVKW+DLRFTDT+G + HVT+PARD + ++FFE G+MFDGSSI GWKGI
Sbjct: 3 AKTLALIEEHDVKWVDLRFTDTRGKEQHVTIPARD-VNEEFFENGQMFDGSSIHGWKGIN 61
Query: 62 ASDMILLPDDDTAVLDPFTEDATLILVCDIIEPSTMQGYDRDPRAIAHRAEEYLKTTGIG 121
SDMIL P+D TA LDPFTEDATL++ CDIIEP+TMQGY+RDPR+IA RAE YL++TG+G
Sbjct: 62 ESDMILRPEDGTAFLDPFTEDATLVVRCDIIEPATMQGYERDPRSIAKRAEAYLQSTGLG 121
Query: 122 DTVFAGPEPEFFIFDEVKFKSDISGSMFKIYSEQGSWMSDQDIEGGNKGHRPGVKGGYFP 181
DT F GPEPEFFIFD+V +K+DI G+M+KI SE+G+W +D+ +EGGN GHRP VKGGYFP
Sbjct: 122 DTAFFGPEPEFFIFDQVHWKADIEGAMYKITSEEGAWSTDRQLEGGNLGHRPRVKGGYFP 181
Query: 182 VPPFDHDHEIRTAMCNALEEMGQTVEVHHHEVATAGQNEIGVKFNTLVKKADEVQTLKYV 241
VPP D H+IR AMCN LE +GQTVEVHHHEV+ AGQNEIGVKFNTLVKKADEVQ LKYV
Sbjct: 182 VPPVDSFHDIRGAMCNTLEAIGQTVEVHHHEVSNAGQNEIGVKFNTLVKKADEVQELKYV 241
Query: 242 VHNVADAYGRTATFMPKPLYGDNGSGMHVHMSIAKDGKNTFAGEGYAGLSETALYFIGGI 301
+HNVA AYG+TATFMPKPL GDNGSGMHVH S KDG+N FAG+ YAGLSE ALY+IGGI
Sbjct: 242 IHNVAHAYGKTATFMPKPLVGDNGSGMHVHQSFWKDGQNQFAGDQYAGLSEMALYYIGGI 301
Query: 302 IKHGKALNGFTNPATNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVNSPRGRRIEARFP 361
IKH +ALN FTN +TNSYKRLVPGFEAPVMLAYSARNRSASIRIPY SP+G+RIEARFP
Sbjct: 302 IKHARALNAFTNASTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYTASPKGKRIEARFP 361
Query: 362 DPAANPYLAFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEEL 421
DP ANPYLAF+A+LMAG+DGI+NKIHPGDA DKNLYDLPPEE K++P V SL +ALE L
Sbjct: 362 DPTANPYLAFSAMLMAGIDGIKNKIHPGDAMDKNLYDLPPEEGKKVPTVAHSLDQALEAL 421
Query: 422 DKGRAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYSC 468
DK RAFLT+GGVF+DD IDAYI LK E+ ++R HP+E+++YYSC
Sbjct: 422 DKDRAFLTEGGVFTDDMIDAYIELKMEDVERIRMTTHPIEFDMYYSC 468
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 774
Number of extensions: 24
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 468
Length adjustment: 33
Effective length of query: 435
Effective length of database: 435
Effective search space: 189225
Effective search space used: 189225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Align candidate WP_086510693.1 BZY95_RS14880 (glutamate--ammonia ligase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))
../bin/blast/fastacmd -i /tmp/list.19254.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19254.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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