Alignments for a candidate for hisC in Billgrantia desiderata SP1

Align histidinol-phosphate aminotransferase (EC 2.6.1.9) (characterized)
to candidate WP_086508681.1 BZY95_RS03940 histidinol-phosphate transaminase

Query= reanno::psRCH2:GFF3234
         (348 letters)



>NCBI__GCF_002151265.1:WP_086508681.1
          Length = 351

 Score =  385 bits (989), Expect = e-112
 Identities = 195/346 (56%), Positives = 250/346 (72%), Gaps = 1/346 (0%)

Query: 1   MSKFWSPFVKDLVPYVPGEQPKLSKLVKLNTNENPYGPSPRAIAAMQAELNDSLRLYPDP 60
           MS+FWSP V++L PYVPGEQP+  KL+KLNTNENPY P+P   AA++    D LRLYPDP
Sbjct: 1   MSQFWSPAVRELTPYVPGEQPR-EKLIKLNTNENPYPPAPGVEAALREYPVDHLRLYPDP 59

Query: 61  NGERLKQAVADYYGVQPAQVFVGNGSDEVLAHAFHGLFQHAGPLLFPDISYSFYPVYCGL 120
               L+QA+A  +GV   QVFVGNGSDEVLA AF   F H  PL  PDI+YSFYPVYC L
Sbjct: 60  QSLALRQALAREHGVAVEQVFVGNGSDEVLALAFQAFFCHERPLEMPDITYSFYPVYCKL 119

Query: 121 YGIAYETVALDEQFQIDVADYNRPNGGIIFPNPNAPTGCLLALEAIERLLQANTETVVLV 180
           YGI   ++ LD+++++D+  +   +GG IF NPNAPT      +AI  LL+  T+ VVLV
Sbjct: 120 YGIERRSLPLDDRWRVDLDAFTADSGGAIFANPNAPTAHGHPRDAIAGLLERLTDQVVLV 179

Query: 181 DEAYVDFGGESAIALVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHPDLIEALERIKNSFN 240
           DEAYVDFGGES + L++R+PNLLVT T SKSRSLAGLR+G A+G  +LIE L R+K+SFN
Sbjct: 180 DEAYVDFGGESVVPLIERFPNLLVTGTFSKSRSLAGLRLGYAIGSSELIEGLVRVKDSFN 239

Query: 241 SYPLDRIAIAGAAAAFEDRAYFQQTCQQVIDSREAVVAAMQGLGFEVLPSAANFIFARHP 300
           SYP+D +A A A A+ EDR +F    ++V+ +RE  V  +  LGFEVLPS ANF+ ARHP
Sbjct: 240 SYPIDSLASALAIASLEDREHFDACRERVVTTRERTVRRLGELGFEVLPSQANFVLARHP 299

Query: 301 QRDAATIAASLREQGVIVRHFKQRRIEQFLRITIGTPEQNQALLEA 346
           + DAA +   LRE+G++VRHF    +  FLRI+IGT ++  +L+EA
Sbjct: 300 EHDAAQLFVGLRERGILVRHFNTEALRDFLRISIGTDDEMDSLIEA 345


Lambda     K      H
   0.320    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 430
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 351
Length adjustment: 29
Effective length of query: 319
Effective length of database: 322
Effective search space:   102718
Effective search space used:   102718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_086508681.1 BZY95_RS03940 (histidinol-phosphate transaminase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.1788.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1788.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.