Alignments for a candidate for hisD in Billgrantia desiderata SP1

Align Histidinol dehydrogenase; HDH; EC 1.1.1.23 (uncharacterized)
to candidate WP_086508840.1 BZY95_RS04815 histidinol dehydrogenase

Query= curated2:Q9RH05
         (430 letters)



>NCBI__GCF_002151265.1:WP_086508840.1
          Length = 436

 Score =  291 bits (745), Expect = 3e-83
 Identities = 165/413 (39%), Positives = 249/413 (60%), Gaps = 5/413 (1%)

Query: 21  DERRESEGDVSRDVSAIIADVKKRGDVAIAELTQKFDRHDLNKGGWQLTQEEIKKACDSL 80
           + R E++  V   V   +  ++ RGD A+ EL++KFDR   +   ++L+Q EI++A   L
Sbjct: 12  EARAEADRKVRETVEQTLQAIETRGDEAVRELSEKFDRW--SPATFRLSQAEIERAISEL 69

Query: 81  PSELMDALKLAATRIRYCHENQLP--ESSEMTDAAGVRMGVRWQAVEAAGLYVPGGRAAY 138
            ++ +D ++ A  +IR   E QL   +  E+    GV +G +   V + G YVPGG    
Sbjct: 70  TAQELDDIRFAQAQIRRFAEAQLASMQDVEVETRPGVVLGHKHIPVNSVGCYVPGGAYPM 129

Query: 139 CSSVLMNAVPAKVAGVKRLVMVTPTPDGFVNPAVIAAAVISEVDEIWKIGGAQAVAALAL 198
            +S  M+ + AKVAGVKR++   P   G  +PA++AA  ++  DEI  +GG QAV A+A+
Sbjct: 130 VASAHMSVLTAKVAGVKRVIAAAPPYQGKPHPAIVAAMHLAGADEILVLGGVQAVGAMAI 189

Query: 199 GTEKIKPVDVVVGPGNAWVAEAKRQLYGQVGIDMVAGPSEIVVVADKDNDPEWLAADLLS 258
           GTE I+ VD++VGPGNA+VAEAKRQL+G+VGID+ AGP+E +V+AD+  D    A DLL 
Sbjct: 190 GTESIEAVDMLVGPGNAFVAEAKRQLFGRVGIDLFAGPTETLVIADETVDGLLCATDLLG 249

Query: 259 QAEHDPTSQSILISDSEDLIEKTIEAVGRRLEKLETQKVARESWDKHGATILVQSLDEAP 318
           QAEH PTS + L+++SE L + T+ A+   L KL T ++AR++W+ +G  I+  S +E  
Sbjct: 250 QAEHGPTSPAALLTNSEALAKATLTAIDELLAKLPTAEIARQAWNDYGEVIVCDSHEEML 309

Query: 319 ALVDRLAPEHLELAVADPDALFANVHHSGSVFLGRYTPEAIGDYVGGPNHVLPTGRRARF 378
            + D +A EH+++   DP+     + + G++FLG  T  A GD V G NH LPT + AR+
Sbjct: 310 QVADEMAYEHVQVMTEDPNLYLDRLTNYGALFLGPRTNVAYGDKVIGTNHTLPTRKAARY 369

Query: 379 SSGLSVIDFMKRTTYLN-CSQEALSKIGPAAVTLAKAEGLPAHAESVISRLNK 430
           + GL V  F+K  TY    + EA ++IG     L   EG   H E    R+ +
Sbjct: 370 TGGLWVGKFLKTCTYQKVLTDEASAEIGSYCSRLCALEGFAGHGEQANERVRR 422


Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 439
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 436
Length adjustment: 32
Effective length of query: 398
Effective length of database: 404
Effective search space:   160792
Effective search space used:   160792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_086508840.1 BZY95_RS04815 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.22417.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22417.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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