Alignments for a candidate for hisD in Billgrantia desiderata SP1

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate WP_086509840.1 BZY95_RS10280 histidinol dehydrogenase

Query= BRENDA::Q8G2R2
         (430 letters)



>NCBI__GCF_002151265.1:WP_086509840.1
          Length = 441

 Score =  392 bits (1006), Expect = e-113
 Identities = 208/421 (49%), Positives = 281/421 (66%), Gaps = 1/421 (0%)

Query: 9   DPDFEQKFAAFLSGKREVSEDVDRAVREIVDRVRREGDSALLDYSRRFDRIDLEKTGIAV 68
           D DF+ +  A L+ +     +V   V EI+  V+  GD+AL++Y++RFDR+ +       
Sbjct: 18  DGDFDARLDALLAWEGVSDAEVQERVAEIIAAVKVRGDAALVEYTQRFDRLAVGSMAELT 77

Query: 69  TEAE-IDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGSRWTAIEAV 127
             A+ ++ A+   P    +AL  A +RI  +H RQ P+   YT+A G  LG + T ++  
Sbjct: 78  LGADRLEQAYRGLPEQQRDALAQAAERIRLYHERQKPESWSYTEADGSVLGQQVTPLDRA 137

Query: 128 GLYVPGGTASYPSSVLMNAMPAKVAGVDRIVMVVPAPDGNLNPLVLVAARLAGVSEIYRV 187
           G+YVPGG A+YPSSVLMNA+PA VAGV  IVMVVP PDG LN LVL AA LAGV  ++ +
Sbjct: 138 GIYVPGGKAAYPSSVLMNAIPAHVAGVREIVMVVPTPDGVLNELVLAAAHLAGVDHVFTI 197

Query: 188 GGAQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEVLIVADKDN 247
           GGAQA+AALAYGTE++  V KIVGPGN YVA AKR VFG VGIDMIAGPSE+L+V+D   
Sbjct: 198 GGAQAVAALAYGTESVPRVDKIVGPGNIYVATAKRAVFGQVGIDMIAGPSEILVVSDGGT 257

Query: 248 NPDWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETASASWRDFGA 307
           +PDW+A DL +QAEHD  AQ++L++ DE+    VE ++ R L TL R      S    GA
Sbjct: 258 DPDWLAMDLFSQAEHDEDAQALLVSWDESHLDRVEASIARLLPTLEREAIVRESLARRGA 317

Query: 308 VILVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVIGDYVGGCN 367
           +I  +D ++A+ L NRIA EHLE+++A+ EA +P++R+AG+IF+G YT E +GDY  G N
Sbjct: 318 LIHCRDRDEAVQLINRIAPEHLELSLAEPEAMLPQVRHAGAIFMGRYTAEALGDYCAGPN 377

Query: 368 HVLPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDAHAQSVAIR 427
           HVLPT+ +ARFSS L V D+ KR+S++         LG  A  +AR E L AHA+S   R
Sbjct: 378 HVLPTSGTARFSSPLGVYDFQKRSSIIHCSEAGASTLGRVASVLARGESLTAHARSAEYR 437

Query: 428 L 428
           +
Sbjct: 438 I 438


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 518
Number of extensions: 25
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 441
Length adjustment: 32
Effective length of query: 398
Effective length of database: 409
Effective search space:   162782
Effective search space used:   162782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_086509840.1 BZY95_RS10280 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.13167.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13167.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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