Alignments for a candidate for hisF in Billgrantia desiderata SP1

Align Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 (characterized)
to candidate WP_086508673.1 BZY95_RS03890 imidazole glycerol phosphate synthase subunit HisF

Query= SwissProt::Q7SIB9
         (252 letters)



>NCBI__GCF_002151265.1:WP_086508673.1
          Length = 257

 Score =  309 bits (791), Expect = 4e-89
 Identities = 154/257 (59%), Positives = 200/257 (77%), Gaps = 6/257 (2%)

Query: 1   MSLAKRIVPCLDVHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEER 60
           M LAKRI+PCLDV AGRVVKGVNF+ +RDAGDPVE A+ Y+  GADE+ FLDI+A+HE+R
Sbjct: 1   MGLAKRIIPCLDVDAGRVVKGVNFIGIRDAGDPVEIAQRYNLQGADEITFLDITASHEDR 60

Query: 61  AILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADH 120
              +++V R+A  VFIPLTVGGG+R+ +D R +L +GADKVS+N+AAV  P+ +RE A+ 
Sbjct: 61  DTTVEMVERIAGEVFIPLTVGGGIRTCDDIRTMLNAGADKVSINTAAVTNPDFVREAAER 120

Query: 121 FGAQAVVLAIDAR---WRGDFP--EVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMD 175
           FG+Q +V+AIDA+     G+ P  E+   GGR PTGL AVEWA K VE GAGE+LLTSMD
Sbjct: 121 FGSQCIVVAIDAKRVSTEGETPRWEIFTHGGRRPTGLDAVEWAKKMVEYGAGELLLTSMD 180

Query: 176 RDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLE-AFQAGAEAALAASVFHFGEIP 234
           RDGTK G+DL +TR +++AV VPVIASGG G ++H +    + GA+A LAAS+FHFGE  
Sbjct: 181 RDGTKAGFDLGVTRAISDAVTVPVIASGGVGNLDHLVAGVLEGGADAVLAASIFHFGEYT 240

Query: 235 IPKLKRYLAEKGVHVRL 251
           IP+ KRY+AE+G+ +RL
Sbjct: 241 IPEAKRYMAERGIEMRL 257


Lambda     K      H
   0.321    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 255
Number of extensions: 11
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 257
Length adjustment: 24
Effective length of query: 228
Effective length of database: 233
Effective search space:    53124
Effective search space used:    53124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_086508673.1 BZY95_RS03890 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.8159.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8159.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.