Alignments for a candidate for hisG in Billgrantia desiderata SP1

Align ATP phosphoribosyltransferase (EC 2.4.2.17) (characterized)
to candidate WP_010629168.1 BZY95_RS10285 ATP phosphoribosyltransferase

Query= reanno::Putida:PP_0965
         (211 letters)



>NCBI__GCF_002151265.1:WP_010629168.1
          Length = 220

 Score =  295 bits (755), Expect = 4e-85
 Identities = 147/207 (71%), Positives = 179/207 (86%)

Query: 2   LTIALSKGRILDDTLPLLAEAGIVPTENPDKSRKLIIPTTQDDVRLLIVRATDVPTYVEH 61
           L +ALSKGRILD+TLPLLA+AGIVP E+  KSRKL+  T  DDV+L+I+RATDVPTYV+ 
Sbjct: 5   LILALSKGRILDETLPLLADAGIVPAEDLSKSRKLLFDTNLDDVKLVIIRATDVPTYVQM 64

Query: 62  GAADLGVAGKDVLMEYGGQGLYEPLDLQIAQCKLMTAGVVGAAEPKGRLRVATKFVNVAK 121
           GAADLGVAGKDVL+E+G +GLYEPLDL+IA+CKLMTAG+ GA   + R RVATKFVNVA+
Sbjct: 65  GAADLGVAGKDVLLEHGAEGLYEPLDLEIAKCKLMTAGIDGAKPARARRRVATKFVNVAR 124

Query: 122 RYYAEQGRQVDIIKLYGSMELAPLINLADKIIDVVDTGNTLRANGLEPQELIATISSRLV 181
           RYYAEQG Q ++IKLYG+MELAPL+NLAD+I+D+VDTGNTLRANG+ P+ELIA IS+RLV
Sbjct: 125 RYYAEQGIQAEVIKLYGAMELAPLMNLADEIVDIVDTGNTLRANGMSPRELIAPISTRLV 184

Query: 182 VNKASMKMQHARIQSLIDTLRAAVESR 208
           VNKA+M M+H R++ L+  L  AVE R
Sbjct: 185 VNKAAMTMKHERLKPLLARLSQAVERR 211


Lambda     K      H
   0.318    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 206
Number of extensions: 4
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 220
Length adjustment: 22
Effective length of query: 189
Effective length of database: 198
Effective search space:    37422
Effective search space used:    37422
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate WP_010629168.1 BZY95_RS10285 (ATP phosphoribosyltransferase)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.14297.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14297.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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