Alignments for a candidate for hisH in Billgrantia desiderata SP1

Align IGP synthase, amidotransferase subunit (EC 4.3.2.10) (characterized)
to candidate WP_086508671.1 BZY95_RS03880 imidazole glycerol phosphate synthase subunit HisH

Query= reanno::HerbieS:HSERO_RS20325
         (212 letters)



>NCBI__GCF_002151265.1:WP_086508671.1
          Length = 213

 Score =  213 bits (541), Expect = 3e-60
 Identities = 118/213 (55%), Positives = 141/213 (66%), Gaps = 6/213 (2%)

Query: 4   IVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSLRES 63
           I V+DYGMGNL SVA+AL HV  E  V I+ +   I+ A R+VLPGQGA+ DCM  L  +
Sbjct: 3   IAVIDYGMGNLHSVAKALEHVTHE-HVVITRDPRRIQGATRLVLPGQGAIRDCMGELERT 61

Query: 64  GVQDAVIE--ASRTKPLFGVCVGEQMLFDWSEE-GDTPGLGLLPGKVVRFDLEGMRQDDG 120
            ++  V E  AS++KPL G+CVG+QML D SEE G  P LG L GKV RF ++ M  D G
Sbjct: 62  ELRGLVQELLASQSKPLLGICVGQQMLLDHSEESGGIPCLGFLSGKVKRFPVD-MVDDHG 120

Query: 121 SLFKVPQMGWNHVHQTSRHPLWEGIADNAFFYFVHSYYAVPAESAHVVGQTPYGR-DFAC 179
              KVP MGWN VHQ   HPLWEGI  +  FYFVHSYY    + A V+G T YGR +   
Sbjct: 121 QRLKVPHMGWNLVHQHHEHPLWEGIDQDEHFYFVHSYYVAAEDDACVLGTTRYGRIEAHV 180

Query: 180 AVARDNIFATQFHPEKSASAGLQLYRNFVHWKP 212
           AV RD  FA QFHPEKS+ AGL+L  NFV+W P
Sbjct: 181 AVGRDATFAVQFHPEKSSRAGLKLLENFVNWAP 213


Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 171
Number of extensions: 9
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 213
Length adjustment: 21
Effective length of query: 191
Effective length of database: 192
Effective search space:    36672
Effective search space used:    36672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_086508671.1 BZY95_RS03880 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.26704.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26704.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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