Align dihydroxyacid dehydratase (characterized)
to candidate WP_086509434.1 BZY95_RS08080 dihydroxy-acid dehydratase
Query= CharProtDB::CH_024768 (616 letters) >NCBI__GCF_002151265.1:WP_086509434.1 Length = 614 Score = 933 bits (2412), Expect = 0.0 Identities = 468/615 (76%), Positives = 528/615 (85%), Gaps = 3/615 (0%) Query: 1 MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLV 60 MP+YRS TTT GRNMAGARALWRATGM D DF KPIIAV NSFTQFVPGHVHL+D+G+LV Sbjct: 1 MPQYRSRTTTAGRNMAGARALWRATGMKDEDFHKPIIAVANSFTQFVPGHVHLKDMGQLV 60 Query: 61 AEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120 A +IE AGGVAKEFNTIAVDDGIAMGH GMLYSLPSR++IADSVEYMVNAHCADA+VCIS Sbjct: 61 AREIEKAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRDIIADSVEYMVNAHCADALVCIS 120 Query: 121 NCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQ 180 NCDKITPGMLMA++RLNIPVIFVSGGPMEAGKTKL D LDLVDAM+ AD V D Sbjct: 121 NCDKITPGMLMAAMRLNIPVIFVSGGPMEAGKTKLLDH--GLDLVDAMVMAADDSVDDET 178 Query: 181 SDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIV 240 +VERSACPTCGSCSGMFTANSMNCLTEALGL+ PGNG++LATHADR++LF AG RIV Sbjct: 179 LAEVERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGTVLATHADRRRLFETAGHRIV 238 Query: 241 ELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSD 300 EL KRYYE ++ LPR I SKAAF+NAMTLDIAMGGSTNT+LHLLAAAQEAEIDFTM+D Sbjct: 239 ELAKRYYEGDEAHLLPRAIGSKAAFKNAMTLDIAMGGSTNTILHLLAAAQEAEIDFTMAD 298 Query: 301 IDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQT 360 ID+LSR+VPQLCKVAP+TQKYH+EDVHRAGG++ ILGELDRAG+L+ V V G +L + Sbjct: 299 IDRLSREVPQLCKVAPNTQKYHIEDVHRAGGIMAILGELDRAGVLDTRVPTVYGDSLKEA 358 Query: 361 LEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEHAYSKDG 420 L+++D+M V F+AGP G+ T AFSQ RW TLD DRANGCIR LEHA+S++G Sbjct: 359 LDEWDIMRNPSPEVVEFFKAGPGGVPTQVAFSQSARWPTLDGDRANGCIRDLEHAFSREG 418 Query: 421 GLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRY 480 GLAVLYGN A +GC+VKTAGVDDSIL F GPA V ESQD AVE IL G+V G+VVVIRY Sbjct: 419 GLAVLYGNIAVDGCVVKTAGVDDSILVFEGPAHVVESQDQAVEHILAGQVKEGEVVVIRY 478 Query: 481 EGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGL 540 EGPKGGPGMQEMLYPTS+LKS GLGKACAL+TDGRFSGGTSGLSIGHVSPEAA+GG+IGL Sbjct: 479 EGPKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHVSPEAAAGGAIGL 538 Query: 541 IEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTPK-NRERQVSFALRAYASL 599 + GD+I IDIPNR I +++SD+ELAARREA++ARG +AW P R R+VS AL+AYA L Sbjct: 539 VRSGDIIRIDIPNRRIDVKLSDSELAARREAEEARGSQAWKPSIQRVRKVSAALKAYALL 598 Query: 600 ATSADKGAVRDKSKL 614 ATSADKGAVRD SKL Sbjct: 599 ATSADKGAVRDLSKL 613 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1243 Number of extensions: 40 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 616 Length of database: 614 Length adjustment: 37 Effective length of query: 579 Effective length of database: 577 Effective search space: 334083 Effective search space used: 334083 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate WP_086509434.1 BZY95_RS08080 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.11546.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11546.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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