Alignments for a candidate for ilvD in Billgrantia desiderata SP1

Align dihydroxy-acid dehydratase (EC 4.2.1.9) (characterized)
to candidate WP_086508318.1 BZY95_RS01905 dihydroxy-acid dehydratase

Query= BRENDA::A0A481UJA7
         (614 letters)



>NCBI__GCF_002151265.1:WP_086508318.1
          Length = 561

 Score =  583 bits (1504), Expect = e-171
 Identities = 300/553 (54%), Positives = 388/553 (70%), Gaps = 4/553 (0%)

Query: 61  KYSSRITEPKSQGGSQAILHGVGLSDEDLNKPQIGISSVWYEGNTCNMHLLRLSEAVKEG 120
           ++S+ + +   +  S+A+L  VG SDED  KPQ+GI+S W     CN H+  L+E  ++G
Sbjct: 10  RHSAPVVDGVGKSASRAMLRAVGFSDEDFTKPQVGIASTWSMVTPCNSHIHELAERARDG 69

Query: 121 VKEAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPGCD 180
              AG  G  FNT+ +SD I+ GT GM YSL SR++IADSIETV   + +DG ++I GCD
Sbjct: 70  ADAAGGKGVIFNTVTISDGIANGTEGMKYSLVSREVIADSIETVAGCEGFDGLVAIGGCD 129

Query: 181 KNMPGTIMAMGRLNRPSIMVYGGTIKPGHYNGHSYDIISAFQAYGEYVNGSISDEDRKNV 240
           KNMPG +M + RLNRPS+ VYGGTI+PG    H+ DI+S F+A G +  G +   + K +
Sbjct: 130 KNMPGCLMGLARLNRPSVFVYGGTIQPG--KNHT-DIVSVFEAMGAHSRGDLELIELKQI 186

Query: 241 VHNSCPGAGACGGMYTANTMASAIEAMGMCLPYSSSIPAENPLKLDECRLAGKYLLELLK 300
              + PG G+CGGMYTANTMASAIEA+GM LP SS+  A +  K D+C  AG  +LELL+
Sbjct: 187 EETAIPGPGSCGGMYTANTMASAIEALGMSLPGSSAQNAVSQAKRDDCEAAGAAVLELLE 246

Query: 301 MDLKPQNIITPQSLRNAMVVVMALGGSTNAVLHLIPIARSVGLELTLEDFQKVSDEVPFL 360
            D+KP +I+T Q+  NA+ VV+ALGGSTNAVLHLI +A +VG+ L+L DF ++   VP L
Sbjct: 247 RDIKPSDIMTRQAFENAVTVVIALGGSTNAVLHLIAMANTVGVPLSLVDFTEIGRRVPVL 306

Query: 361 ADLKPSGKYVMEDVHKIGGTPAVLRYLLEHGFLDGDCLTVTGKTLAENVQNCPPLSEGQD 420
           ADL+PSG+Y+M ++ +IGG   +++ LL+ G L GDCLTVTG+TLAEN+ N  P  + Q 
Sbjct: 307 ADLRPSGRYMMSELVEIGGIQPLMKTLLDAGLLHGDCLTVTGRTLAENLANVAPYPDDQK 366

Query: 421 IIRPLENPIKKTGHIQILQGNLAPEGSVAKITGKEGLYFSGPALVFEGEEAMLAAISENP 480
           II  L+ P+K   H++IL GNLAPEG+VAKITGKEG  FSG A VF  EE   A I++  
Sbjct: 367 IIAALDAPLKAESHLRILFGNLAPEGAVAKITGKEGTRFSGTARVFGSEEEAQARINDGT 426

Query: 481 MNFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDCALLTDGRFSGGSHGFVVGHI 540
           +   G VVVIR EGP+GGPGM EMLTPTSAIMG GLG   AL+TDGRFSGGSHGFVVGH+
Sbjct: 427 V-VAGDVVVIRYEGPRGGPGMREMLTPTSAIMGRGLGDSVALITDGRFSGGSHGFVVGHV 485

Query: 541 CPEAQEGGPIGLVRNGDIIRIDVRERRIDVDVTDQEMEERRKNWTPPPYKATCGVLYKYI 600
            PEA +GGP+ LV +GD+I ID     IDVD++D+E+  RR  W  P  + T GVL KY 
Sbjct: 486 TPEAFDGGPLALVEDGDMITIDAEADTIDVDLSDEELMRRRAAWQQPAPRYTRGVLAKYA 545

Query: 601 KNVQSASRGCVTD 613
           + V SAS G VTD
Sbjct: 546 RTVSSASTGAVTD 558


Lambda     K      H
   0.316    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 966
Number of extensions: 38
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 561
Length adjustment: 37
Effective length of query: 577
Effective length of database: 524
Effective search space:   302348
Effective search space used:   302348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)

Align candidate WP_086508318.1 BZY95_RS01905 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.5072.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5072.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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