Alignments for a candidate for ilvE in Billgrantia desiderata SP1

Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate WP_086508101.1 BZY95_RS00615 branched-chain amino acid aminotransferase

Query= BRENDA::A0R066
         (368 letters)



>NCBI__GCF_002151265.1:WP_086508101.1
          Length = 358

 Score =  413 bits (1062), Expect = e-120
 Identities = 207/355 (58%), Positives = 253/355 (71%), Gaps = 7/355 (1%)

Query: 16  PATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQE 75
           P    +R  ILANPGFG ++TDHM  + +T D GWH  +V PYGP+ LDP+A VLHYGQE
Sbjct: 7   PTAANIRADILANPGFGLHFTDHMAHVRWTADAGWHGHEVRPYGPLTLDPAAAVLHYGQE 66

Query: 76  IFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVP 135
           IFEG+KAYR ADGS+ SFRPE NA R + SARRLA+PEL +E F+ESLR L+ +D+ WVP
Sbjct: 67  IFEGIKAYRHADGSVWSFRPEKNAERFRRSARRLALPELDDETFVESLRALMQLDQGWVP 126

Query: 136 P---AGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEY 192
               AG E SLYLRPF+IA+E  LGVRP+ E  Y +IASPAGAYFKGGI PVS+WLS  Y
Sbjct: 127 TPKNAGDESSLYLRPFMIASEKFLGVRPAKEVDYYVIASPAGAYFKGGIAPVSIWLSSHY 186

Query: 193 VRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGS 252
            RA+PGGTG AK GGNYAASL AQ +A + GC QV +LDA E +++EE+GGMNLFFV+  
Sbjct: 187 KRAAPGGTGFAKCGGNYAASLAAQKEAEKHGCSQVAFLDAAENKWIEELGGMNLFFVYKD 246

Query: 253 GGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFAC 312
           G   RLVTP L+ ++L G+TRDS+L L  D G   EER I +DEW+    +G+I EVFAC
Sbjct: 247 G---RLVTPRLTDTILEGVTRDSVLTLGRDEGLTPEERAISIDEWRDGVASGDIAEVFAC 303

Query: 313 GTAAVITPVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARL 367
           GTAAVITPV  +   +G   + D    EI   LR  L  +Q G   D HGW+ +L
Sbjct: 304 GTAAVITPVGQLVTEEGTVQMPDA-GNEIAKRLRGKLLDLQYGRAEDKHGWLTKL 357


Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 470
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 358
Length adjustment: 29
Effective length of query: 339
Effective length of database: 329
Effective search space:   111531
Effective search space used:   111531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_086508101.1 BZY95_RS00615 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.31011.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31011.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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