Alignments for a candidate for ilvI in Billgrantia desiderata SP1

Align acetolactate synthase (subunit 2/2) (EC 2.2.1.6) (characterized)
to candidate WP_086511579.1 BZY95_RS19630 acetolactate synthase 3 large subunit

Query= BRENDA::P00893
         (574 letters)



>NCBI__GCF_002151265.1:WP_086511579.1
          Length = 574

 Score =  692 bits (1785), Expect = 0.0
 Identities = 335/577 (58%), Positives = 430/577 (74%), Gaps = 6/577 (1%)

Query: 1   MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADG 60
           ME+LSGA+M+ R L D+GV+ ++GYPGGA L IYDAL     + H+LVRHEQAA H ADG
Sbjct: 1   MELLSGADMIARFLQDEGVEYIYGYPGGAALHIYDALFRQDKVKHILVRHEQAATHAADG 60

Query: 61  LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVG 120
            ARA+G+ GVVLVTSGPGATNA+TGIATAYMDSIP+VVL GQV + LIG DAFQE D++G
Sbjct: 61  YARASGKPGVVLVTSGPGATNAVTGIATAYMDSIPMVVLCGQVMSHLIGDDAFQETDIIG 120

Query: 121 ISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESV 180
           ++RP+VKHSF +K   +IP+VLKKAF+LA++GRPGPVVVD+PKD+  P  +  YV+P+ V
Sbjct: 121 VTRPIVKHSFSIKHPTEIPEVLKKAFYLASTGRPGPVVVDIPKDMTAPTERYEYVYPKKV 180

Query: 181 SMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVCS 240
            +RSYNP   GH GQIK+A++ ++ AK+PV Y GGG IT    + L + V+ L  P+  +
Sbjct: 181 KLRSYNPVARGHTGQIKKAVEMMLKAKRPVFYTGGGVITGRACEGLTDLVKRLGYPITTT 240

Query: 241 LMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATV 300
           LMG+GA+P + RQ LG LGMHG+YE+NM MH+AD+I A+G RFDDR TNN +K+CP A +
Sbjct: 241 LMGIGAYPQSDRQCLGWLGMHGSYESNMAMHHADLIIAIGARFDDRVTNNTSKFCPTAKI 300

Query: 301 LHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRAR 360
           +H+DIDP+S+SKTV AD+PIVG A  V+++M+ L+  +    P + + +WWQ+I+ WR  
Sbjct: 301 IHVDIDPSSVSKTVRADVPIVGPAASVIDEMISLVQGKEIAHP-EALTEWWQKIDGWREE 359

Query: 361 QCLKYDTHS---EKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINS 417
           +  K    S   E++KPQ VIE L  +T+G+AYVT+DVGQHQMFAA YY FDKP R+I S
Sbjct: 360 RRGKLYEPSKPGEQLKPQEVIEALCEITRGEAYVTTDVGQHQMFAAQYYKFDKPNRFITS 419

Query: 418 GGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRY 477
           GGLGTMGFG PAA+G+K   PEETVVCVTG+GS QM +QELST  Q+   V ++NLNN  
Sbjct: 420 GGLGTMGFGFPAAMGIKQNFPEETVVCVTGEGSFQMMMQELSTCKQFGGGVKIINLNNAS 479

Query: 478 LGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRN 537
           LGMV+QWQD+ Y  RH+ SYM+SLPDF +L EAYG   +++    EL   L         
Sbjct: 480 LGMVRQWQDLNYKSRHAHSYMESLPDFAKLIEAYGFTALRVETMDELRPALERTFAD--K 537

Query: 538 NRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574
           + LVFVDV VD  EHVYPMQ+  G M +M LSKTERT
Sbjct: 538 HELVFVDVIVDPREHVYPMQVPLGSMRDMLLSKTERT 574


Lambda     K      H
   0.319    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1004
Number of extensions: 33
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 574
Length adjustment: 36
Effective length of query: 538
Effective length of database: 538
Effective search space:   289444
Effective search space used:   289444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate WP_086511579.1 BZY95_RS19630 (acetolactate synthase 3 large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.1478.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1478.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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