Alignments for a candidate for leuB in Billgrantia desiderata SP1

Align 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 (characterized)
to candidate WP_086508767.1 BZY95_RS04410 3-isopropylmalate dehydrogenase

Query= SwissProt::Q56268
         (358 letters)



>NCBI__GCF_002151265.1:WP_086508767.1
          Length = 359

 Score =  443 bits (1139), Expect = e-129
 Identities = 234/354 (66%), Positives = 274/354 (77%), Gaps = 3/354 (0%)

Query: 2   KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQL 61
           +KI +  GDGIGPEI A A ++L A  QA  L +   +GLVGG+A D   +PLPA +L  
Sbjct: 3   RKILVLPGDGIGPEITAEASRILAAC-QAHGLDIEIEQGLVGGSAYDEHGEPLPAVTLDK 61

Query: 62  AMAADAVILGAVGGPRWDAYPP-AKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLR 120
           A AADA++LGAVGGP+WD     AKRPE+GLL LRK L L+ANLRPA  +PQL  AS L+
Sbjct: 62  AKAADAILLGAVGGPKWDKLEDLAKRPEKGLLGLRKNLGLFANLRPAITYPQLASASSLK 121

Query: 121 PELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQG 180
           PELV  +DI++VRELTG IYFGQPRG+EV DG+R GFNT +Y E EI RI  VAF  AQ 
Sbjct: 122 PELVAGLDIMIVRELTGGIYFGQPRGIEVRDGQRVGFNTYIYSESEIERIGRVAFELAQK 181

Query: 181 RRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLT 240
           R K+LCSVDKANVLE T LWREV+  +A +YPDV LSHMYVDNAAMQL+RAP QFDV++T
Sbjct: 182 RGKRLCSVDKANVLEVTILWREVMERLAPEYPDVELSHMYVDNAAMQLVRAPKQFDVMVT 241

Query: 241 GNMFGDILSDEASQLTGSIGMLPSASLGE-GRAMYEPIHGSAPDIAGQDKANPLATILSV 299
           GNMFGDILSD A+ LTGSIGMLPSASL E G+ MYEP HGSAPDIAG+  ANPLATILSV
Sbjct: 242 GNMFGDILSDAAAMLTGSIGMLPSASLNESGQGMYEPCHGSAPDIAGKGIANPLATILSV 301

Query: 300 AMMLRHSLNAEPWAQRVEAAVQRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNA 353
           AMMLR+SL    +A R+EAAV +VLD GLRTADIA+ GT  + T+ MG AV+ A
Sbjct: 302 AMMLRYSLGEPEFAGRIEAAVGKVLDDGLRTADIASEGTRTVSTREMGDAVLAA 355


Lambda     K      H
   0.320    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 429
Number of extensions: 17
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 359
Length adjustment: 29
Effective length of query: 329
Effective length of database: 330
Effective search space:   108570
Effective search space used:   108570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_086508767.1 BZY95_RS04410 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.21147.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21147.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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