Alignments for a candidate for leuC in Billgrantia desiderata SP1

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate WP_086508303.1 BZY95_RS01840 3-isopropylmalate dehydratase large subunit

Query= CharProtDB::CH_024771
         (466 letters)



>NCBI__GCF_002151265.1:WP_086508303.1
          Length = 465

 Score =  504 bits (1297), Expect = e-147
 Identities = 250/466 (53%), Positives = 330/466 (70%), Gaps = 4/466 (0%)

Query: 1   MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFAT 60
           M  TL++K++DAH +   E+   LL+IDRH VHE  S  AF+ L      V +P  TF  
Sbjct: 3   MPTTLFDKVWDAHEILRGESGQSLLWIDRHFVHE-GSFHAFNKLHERELSVARPDLTFGI 61

Query: 61  MDHNVSTQTKDINACGEM-ARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTL 119
            DH V T T+ ++A G+   R  +++L  N +  G+ L+ L+ P QGIVHV+GPEQG+T 
Sbjct: 62  ADHYVPTLTRRLDAIGDAKVRGMIEQLADNTRHHGITLFGLDDPRQGIVHVLGPEQGLTQ 121

Query: 120 PGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGIT 179
           PG+ +VCGDSHT+THGAFG++AFGIG SEV HVLATQTL Q R K M++ V+G+ APGI+
Sbjct: 122 PGLLMVCGDSHTSTHGAFGSIAFGIGASEVAHVLATQTLWQSRPKKMRLTVEGELAPGIS 181

Query: 180 AKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETT 239
           AKDI L  I + G+ G  G+ +E+ G AIR LSME R+TLCN++IE GA+ G++APD TT
Sbjct: 182 AKDIALTWIARLGADGARGYAIEYAGSAIRSLSMEARLTLCNLSIEGGARCGMIAPDATT 241

Query: 240 FNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVIS 299
           F+Y++GR  AP+G  ++ A+AYW+TL++D+GA FD    L A EI+P VTWG +P + + 
Sbjct: 242 FDYLRGRPFAPRGAQWEQALAYWQTLKSDDGARFDREERLAAAEIAPTVTWGVSPEEALP 301

Query: 300 VNDNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAA 359
           ++  +PDPA   D  +      +L YMGL  G  LT++ ID+VFIGSCTN+R+EDLRAAA
Sbjct: 302 IDARVPDPADQRDAGKARQLRDSLDYMGLAAGQKLTDIVIDRVFIGSCTNARLEDLRAAA 361

Query: 360 EIAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLN 419
            + +GR+    V  +V PGS  VK QAEAEGLD +F EAG EWR  GCSMC+ MN D + 
Sbjct: 362 AVLRGRR--SKVPGIVSPGSTQVKRQAEAEGLDAVFREAGLEWRESGCSMCVGMNGDLVP 419

Query: 420 PGERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNI 465
           PGERCAST+NRNF+GRQG G RTHL+SPAM AAAAV G  AD+R +
Sbjct: 420 PGERCASTTNRNFKGRQGPGARTHLMSPAMVAAAAVAGRLADVREL 465


Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 668
Number of extensions: 20
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 465
Length adjustment: 33
Effective length of query: 433
Effective length of database: 432
Effective search space:   187056
Effective search space used:   187056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_086508303.1 BZY95_RS01840 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.7734.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7734.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.