Alignments for a candidate for leuC in Billgrantia desiderata SP1

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate WP_086508765.1 BZY95_RS04400 3-isopropylmalate dehydratase large subunit

Query= CharProtDB::CH_024771
         (466 letters)



>NCBI__GCF_002151265.1:WP_086508765.1
          Length = 481

 Score =  582 bits (1499), Expect = e-170
 Identities = 294/469 (62%), Positives = 354/469 (75%), Gaps = 8/469 (1%)

Query: 3   KTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFATMD 62
           +TLY+KL+  H+V E ++ T L+YIDR L+HEVTSPQAF+GLR  GR   +     AT D
Sbjct: 4   QTLYDKLWSQHLVKERDDGTALIYIDRQLLHEVTSPQAFEGLRLAGRKPWRLDANLATPD 63

Query: 63  HNVSTQTKDINACGE------MARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQG 116
           HNV T  K+  A G       ++ IQ+Q L  NC EFG+E + +N P QGIVHV+GPEQG
Sbjct: 64  HNVPTTLKE-RAEGNAGIKDPVSLIQVQTLDDNCVEFGIEEFKINDPRQGIVHVVGPEQG 122

Query: 117 VTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAP 176
            TLPGMT+VCGDSHTATHGAF ALA GIGTSEVEHVLATQ L   + K M++ V+GK   
Sbjct: 123 ATLPGMTVVCGDSHTATHGAFAALAHGIGTSEVEHVLATQCLLAQKMKNMQVRVEGKLGT 182

Query: 177 GITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPD 236
           G+TAKD+VLAIIGK G+AGGTG+ +EF G AIRDLSMEGRMT+CNMAIE GA+ GL+A D
Sbjct: 183 GVTAKDVVLAIIGKIGTAGGTGYAIEFAGSAIRDLSMEGRMTVCNMAIEAGARVGLIAVD 242

Query: 237 ETTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQ 296
           +TT  Y+  R  AP+G+ +  AVA W+ L +D  A FD VVTL A EI PQV+WGT+P  
Sbjct: 243 DTTIEYLAERPFAPRGEQWQAAVADWRNLVSDADARFDKVVTLDAAEIEPQVSWGTSPEM 302

Query: 297 VISVNDNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLR 356
           V  ++  +PDPA   D   +    +AL YMGL P   +TE+ +DKVFIGSCTNSRIEDLR
Sbjct: 303 VTGISGEVPDPAEQNDDTVKRGYTRALEYMGLAPKQKITEIKLDKVFIGSCTNSRIEDLR 362

Query: 357 AAAEIAKGRKVAPGVQ-ALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNN 415
            AA++A+G+KVA  ++ A+VVPGSG VK QAEAEGLDK+FIEAGFEWR PGCSMCLAMN 
Sbjct: 363 EAAKVARGKKVADSIKLAMVVPGSGLVKRQAEAEGLDKVFIEAGFEWREPGCSMCLAMNA 422

Query: 416 DRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRN 464
           D+L  GE CASTSNRNFEGRQG GGRTHLVSPAMAAAAA+ GHF D+R+
Sbjct: 423 DKLGAGEHCASTSNRNFEGRQGYGGRTHLVSPAMAAAAAIAGHFVDVRS 471


Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 711
Number of extensions: 29
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 481
Length adjustment: 33
Effective length of query: 433
Effective length of database: 448
Effective search space:   193984
Effective search space used:   193984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_086508765.1 BZY95_RS04400 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.29666.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29666.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.