Alignments for a candidate for leuD in Billgrantia desiderata SP1

Align 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) (characterized)
to candidate WP_086508302.1 BZY95_RS01835 3-isopropylmalate dehydratase small subunit

Query= ecocyc::LEUD-MONOMER
         (201 letters)



>NCBI__GCF_002151265.1:WP_086508302.1
          Length = 210

 Score =  147 bits (372), Expect = 1e-40
 Identities = 84/182 (46%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 14  PLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPDFVLNFPQYQGASI 73
           PL  ANVDTD +IP +F+++    G+G  L +D R  DE G+ P   F+LN PQ   A  
Sbjct: 13  PLPLANVDTDQLIPARFMKEPRSVGYGRFLLHDLRH-DENGR-PVVGFILNHPQADEAKT 70

Query: 74  LLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLLPVKLSDAEVDELF 133
           L+AR NFG GSSRE A +AL D+GF+ VIAPSF DIF  N+ NN LLP  +S+A+ + L 
Sbjct: 71  LVARRNFGAGSSREAAVYALVDFGFRCVIAPSFGDIFASNAVNNGLLPATVSEADAEALL 130

Query: 134 ALVKANPGIHFDVDLEAQEVKAGEKTYRFTIDAFRRHCMMNGLDSIGLTLQHDDAIAAYE 193
           A +  +P     VDLEAQ +  GE +  FTI    R  ++NG D I +T QH   IA + 
Sbjct: 131 AALGESPA-PLRVDLEAQRIAIGELSVAFTIAPTWRTKLLNGWDDIDMTRQHAATIARFA 189

Query: 194 AK 195
            +
Sbjct: 190 TR 191


Lambda     K      H
   0.322    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 139
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 210
Length adjustment: 21
Effective length of query: 180
Effective length of database: 189
Effective search space:    34020
Effective search space used:    34020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_086508302.1 BZY95_RS01835 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.27979.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27979.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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