Alignments for a candidate for leuD in Billgrantia desiderata SP1

Align 3-isopropylmalate dehydratase small subunit; EC 4.2.1.33 (characterized, see rationale)
to candidate WP_086508766.1 BZY95_RS04405 3-isopropylmalate dehydratase small subunit

Query= uniprot:Q845W4
         (216 letters)



>NCBI__GCF_002151265.1:WP_086508766.1
          Length = 217

 Score =  294 bits (753), Expect = 8e-85
 Identities = 143/210 (68%), Positives = 162/210 (77%)

Query: 1   MEKFTVHTGVVAPLDRENVDTDAIIPKQFLKSIKRTGFGPNAFDEWRYLDHGEPGQDNSK 60
           M KF    G+VAPLDR NVDTD IIPKQFLKSIKRTGFG N FDE RYLD G+PGQD S+
Sbjct: 1   MRKFERTEGLVAPLDRANVDTDLIIPKQFLKSIKRTGFGVNLFDELRYLDEGQPGQDCSQ 60

Query: 61  RPLNPDFVLNQPRYQGASILVTRKNFGCGSSREHAPWALQQYGFRAIIAPSFADIFFNNC 120
           RPLNPDFVLNQPRYQGAS+L+ R+NFGCGSSREHAPWAL+ +GFR +IAPSFADIF+NN 
Sbjct: 61  RPLNPDFVLNQPRYQGASVLLARRNFGCGSSREHAPWALEDFGFRVVIAPSFADIFYNNA 120

Query: 121 FKNGLLPIVLTEQQVDHLINETVAFNGYQLTIDLEAQVVRTPDGRDYPFEITAFRKYCLL 180
           FKNGLL I L E+ VD L  E  A  GY+L +DLE Q V TP G    FE+ AFRK+CLL
Sbjct: 121 FKNGLLLITLPEEVVDRLFREVEASEGYRLDVDLENQRVITPAGEILEFEVDAFRKHCLL 180

Query: 181 NGFDDIGLTLRHADKIRQFEAERLAKQPWL 210
            G DDIG+TL+  D IR FE +    +PWL
Sbjct: 181 EGLDDIGITLQDEDAIRAFEVKHRQARPWL 210


Lambda     K      H
   0.322    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 197
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 217
Length adjustment: 22
Effective length of query: 194
Effective length of database: 195
Effective search space:    37830
Effective search space used:    37830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_086508766.1 BZY95_RS04405 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.5233.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5233.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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