Alignments for a candidate for dapA in Billgrantia desiderata SP1

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate WP_010629732.1 BZY95_RS18815 4-hydroxy-tetrahydrodipicolinate synthase

Query= BRENDA::Q9I4W3
         (292 letters)



>NCBI__GCF_002151265.1:WP_010629732.1
          Length = 294

 Score =  365 bits (937), Expect = e-106
 Identities = 181/292 (61%), Positives = 224/292 (76%), Gaps = 1/292 (0%)

Query: 1   MIAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVI 60
           MI GS+VAL TP  A G +DW++L +LV+FHL+ GT+ IVA GTTGE  T+   EH  VI
Sbjct: 1   MITGSIVALATPMKANGDIDWEALRRLVNFHLENGTDGIVAAGTTGEPTTMSFAEHFDVI 60

Query: 61  RRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFR 120
           R VV++V GRIPVIAGTGAN+T EAV L   A   GAD CL V PYYNKPTQEG+Y+HF+
Sbjct: 61  RAVVEEVDGRIPVIAGTGANATSEAVELARYASEVGADYCLSVCPYYNKPTQEGLYRHFK 120

Query: 121 HIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERV-GK 179
            +AE   +P ILYNVPGRT  D+  ETV RL++V NIIG+K+ATG+L+RA+++I R+ G 
Sbjct: 121 AVAEGSRLPVILYNVPGRTCSDLYNETVMRLAEVDNIIGLKDATGNLERAEDLISRLKGS 180

Query: 180 DFLVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPL 239
            F++YSGDD+TA E ML+GG G+ISVTANVAP+AM +LC AA+ GDA  A  IN RLMPL
Sbjct: 181 GFMLYSGDDSTACEFMLMGGNGDISVTANVAPKAMHELCVAAVAGDADRAHQINTRLMPL 240

Query: 240 HKALFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEPLRQAMRQTGVL 291
           H  L IESNPIPVKWALH MGLI +GIRLPLTWLS + H  + +A++  GV+
Sbjct: 241 HTNLGIESNPIPVKWALHRMGLIDQGIRLPLTWLSGKYHATVDEALQLAGVI 292


Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 303
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 294
Length adjustment: 26
Effective length of query: 266
Effective length of database: 268
Effective search space:    71288
Effective search space used:    71288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_010629732.1 BZY95_RS18815 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.5938.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5938.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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