Alignments for a candidate for dapB in Billgrantia desiderata SP1

Align dihydrodipicolinate reductase; EC 1.3.1.26 (characterized)
to candidate WP_086510469.1 BZY95_RS13640 4-hydroxy-tetrahydrodipicolinate reductase

Query= CharProtDB::CH_002128
         (273 letters)



>NCBI__GCF_002151265.1:WP_086510469.1
          Length = 267

 Score =  296 bits (757), Expect = 4e-85
 Identities = 158/265 (59%), Positives = 183/265 (69%), Gaps = 1/265 (0%)

Query: 7   RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSL 66
           R+AI G  GRMGR L+ A     G  L   +   GSSL G+D GELAG GK GVT   SL
Sbjct: 3   RIAIVGVAGRMGRTLVNAVQEDAGATLAGGIVEPGSSLAGADIGELAGLGKLGVTAVDSL 62

Query: 67  DAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFA 126
           DA+ DDFDV IDFT P  TL +LAFC  HGK MVIGTTG  +     +      +  VFA
Sbjct: 63  DAIVDDFDVLIDFTAPRVTLANLAFCAAHGKRMVIGTTGLSDDELAELDGYRERLPFVFA 122

Query: 127 ANFSVGVNVMLKLLEKAAKVMGDYT-DIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKD 185
            N SVGVN+ LKLLE AA+ +GD   DIE+IEAHHRHKVD+PSGTAL MGE +A AL + 
Sbjct: 123 PNMSVGVNLTLKLLETAARALGDEGYDIEVIEAHHRHKVDSPSGTALKMGEVVAEALGRT 182

Query: 186 LKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFAN 245
           LK+  V+ R G  G R    IGFATVRAGDIVGEHT MFA  GER+EITHKASSRMTFA 
Sbjct: 183 LKEHGVFERVGQCGPRDSKEIGFATVRAGDIVGEHTVMFATEGERIEITHKASSRMTFAK 242

Query: 246 GAVRSALWLSGKESGLFDMRDVLDL 270
           GAVR+A W++ +ESG + M+DVL L
Sbjct: 243 GAVRAARWVADQESGRYGMQDVLGL 267


Lambda     K      H
   0.319    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 263
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 267
Length adjustment: 25
Effective length of query: 248
Effective length of database: 242
Effective search space:    60016
Effective search space used:    60016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_086510469.1 BZY95_RS13640 (4-hydroxy-tetrahydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.22806.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22806.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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