Alignments for a candidate for dapE in Billgrantia desiderata SP1

Align succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) (characterized)
to candidate WP_086509351.1 BZY95_RS07630 succinyl-diaminopimelate desuccinylase

Query= BRENDA::Q9KQ52
         (377 letters)



>NCBI__GCF_002151265.1:WP_086509351.1
          Length = 390

 Score =  476 bits (1224), Expect = e-139
 Identities = 234/373 (62%), Positives = 280/373 (75%), Gaps = 1/373 (0%)

Query: 4   SPVLALAKELISRQSVTPADAGCQDLMIERLKALGFEIESMVFEDTTNFWARRGTQSPLF 63
           SP L LA ELI R SVTP D GCQ LMIERL+ LGF IE + F D  NFWA  G   P+ 
Sbjct: 10  SPTLQLAMELIRRPSVTPDDLGCQALMIERLERLGFHIERLPFGDVENFWATHGHHGPVL 69

Query: 64  VFAGHTDVVPAGPLSQWHTPPFEPTVID-GFLHGRGAADMKGSLACMIVAVERFIAEHPD 122
            FAGHTDVVP+GP + W  PPFEP + D G L GRG+ADMKGSLA MI AVERF+  HPD
Sbjct: 70  AFAGHTDVVPSGPHTYWEYPPFEPCIDDDGMLRGRGSADMKGSLAAMITAVERFVTAHPD 129

Query: 123 HQGSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDVVKNGRRGS 182
           H G I FLITSDEEGP ++GT  VVE L  R+E +D CIVGEPSST  +GDV+KNGRRGS
Sbjct: 130 HHGRIAFLITSDEEGPAVDGTRAVVEHLRERHERLDYCIVGEPSSTDVLGDVIKNGRRGS 189

Query: 183 ITGDLKVKGTQGHVAYPHLANNPVHKALPALAELAATQWDEGNAYFPPTSFQIPNLQAGT 242
           + G L +KG QGHVAYPHLA NP+H+A+PAL  L    WD GNA+FP TSFQI N++AGT
Sbjct: 190 LGGVLHIKGIQGHVAYPHLARNPIHQAMPALDALVREHWDSGNAFFPATSFQISNIRAGT 249

Query: 243 GASNVIPGEFDVQFNFRFSTELTDEEIKRRVHSVLDAHGLDYDVKWTLSGQPFLTDTGEL 302
           GA+NVIPG+ +V FNFRFSTE+T E+++ R  ++LDAHGL+Y + WTL+G+PFLT  GEL
Sbjct: 250 GATNVIPGDVEVVFNFRFSTEVTHEQLRERTQAILDAHGLEYQLDWTLNGEPFLTAEGEL 309

Query: 303 LAAVVAAVEEVNHQAPALLTTGGTSDGRFIAQMGAQVVELGPVNATIHKVNECVRIADLE 362
           + A +  VE V  + P L T+GGTSDGRFIA +G+QVVELGP NATIH+ NE VR ADL+
Sbjct: 310 VDAALHGVEAVLGRRPKLSTSGGTSDGRFIATLGSQVVELGPRNATIHQTNERVRAADLD 369

Query: 363 KLTDMYQKTLNHL 375
            L+ +Y+  L  L
Sbjct: 370 DLSRIYEAILGKL 382


Lambda     K      H
   0.318    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 509
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 390
Length adjustment: 30
Effective length of query: 347
Effective length of database: 360
Effective search space:   124920
Effective search space used:   124920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_086509351.1 BZY95_RS07630 (succinyl-diaminopimelate desuccinylase)
to HMM TIGR01246 (dapE: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.9962.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9962.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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