Alignments for a candidate for dapF in Billgrantia desiderata SP1

Align Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 (characterized)
to candidate WP_086511730.1 BZY95_RS20450 diaminopimelate epimerase

Query= SwissProt::P0A6K1
         (274 letters)



>NCBI__GCF_002151265.1:WP_086511730.1
          Length = 277

 Score =  337 bits (865), Expect = 1e-97
 Identities = 168/274 (61%), Positives = 196/274 (71%)

Query: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60
           + F+KMHGLGNDFMV+D +TQ      E IR+LADR  G+GFDQLLVVEPP  P++DF Y
Sbjct: 3   LHFTKMHGLGNDFMVIDLITQRARLRDEQIRKLADRRFGIGFDQLLVVEPPRSPDMDFRY 62

Query: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120
           RIFNADGSEV  CGNGARCFARFVR + LT+KR+I V TA G + L V DDD V V+MG 
Sbjct: 63  RIFNADGSEVENCGNGARCFARFVRDQRLTHKREIHVETAGGPLTLVVNDDDQVTVDMGT 122

Query: 121 PNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVDDVDTAAVETLGPVLE 180
           P FEP+A+PF A +    + +    +    G VSMGNPH V++VDDVDTA VE LGP++E
Sbjct: 123 PRFEPAALPFDATEDRPLHALEVDGERYEIGAVSMGNPHAVLRVDDVDTAPVERLGPLIE 182

Query: 181 SHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVRV 240
            H RFP R N GFMQVV    IRLRV+ERG GET ACG+GACAAVA GI+QGLL   V V
Sbjct: 183 RHPRFPRRVNAGFMQVVSPHEIRLRVFERGTGETLACGTGACAAVASGIRQGLLESPVTV 242

Query: 241 ELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
            L GG L I W G   PL MTGPA  V++G I L
Sbjct: 243 HLRGGDLRIEWSGDEAPLLMTGPAERVFEGRIAL 276


Lambda     K      H
   0.323    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 292
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 277
Length adjustment: 25
Effective length of query: 249
Effective length of database: 252
Effective search space:    62748
Effective search space used:    62748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)

Align candidate WP_086511730.1 BZY95_RS20450 (diaminopimelate epimerase)
to HMM TIGR00652 (dapF: diaminopimelate epimerase (EC 5.1.1.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.6311.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6311.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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