Alignments for a candidate for lysA in Billgrantia desiderata SP1

Align diaminopimelate decarboxylase (EC 4.1.1.20) (characterized)
to candidate WP_086511731.1 BZY95_RS20455 diaminopimelate decarboxylase

Query= BRENDA::Q9KVL7
         (417 letters)



>NCBI__GCF_002151265.1:WP_086511731.1
          Length = 430

 Score =  563 bits (1452), Expect = e-165
 Identities = 285/420 (67%), Positives = 340/420 (80%), Gaps = 5/420 (1%)

Query: 1   MDYFNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAV 60
           MD+F Y+ DG L+ E+VPL  +A++ GTP YVYSRATL RH+ A+ +++G +PHLICYAV
Sbjct: 1   MDHFEYR-DGVLYGEEVPLTQVADEIGTPCYVYSRATLTRHYRAYTEALGSHPHLICYAV 59

Query: 61  KANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKI 120
           KANSNL VLN LARLG+GFDIVS+GELERVLAAGGDP+KVVFSGV K E EM RAL++ I
Sbjct: 60  KANSNLAVLNLLARLGAGFDIVSLGELERVLAAGGDPAKVVFSGVAKQEHEMARALEVGI 119

Query: 121 KCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAA 180
           KCFNVES PEL+RL+ VA  LG  AP+SLR+NPDVDA THPYISTGL+DNKFGI    A 
Sbjct: 120 KCFNVESRPELERLSAVAERLGKVAPVSLRVNPDVDAGTHPYISTGLKDNKFGIAVGEAL 179

Query: 181 QVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGG 240
           +VY LA  LP L V GIDCHIGSQLT LAPF+DA DRLL L++ L   GI + HLD+GGG
Sbjct: 180 EVYELAARLPGLKVVGIDCHIGSQLTELAPFLDALDRLLVLLERLHERGISVEHLDLGGG 239

Query: 241 LGVVYRDELPPQPSEYAKALLDRLERHR---DLELIFEPGRAIAANAGVLVTKVEFLKHT 297
           LGV YR E PPQP +YA +LL+RL + +   +L L+FEPGR+IAANAGVL+T+VEFLK  
Sbjct: 240 LGVPYRGERPPQPFDYAASLLERLAQWKHGENLTLLFEPGRSIAANAGVLLTRVEFLKPG 299

Query: 298 EHKNFAIIDAAMNDLIRPALYQAWQDIIPLRPRQ-GEAQTYDLVGPVCETSDFLGKDRDL 356
           E KNFAI+DA MNDLIRP+LYQAWQ IIP+  R   E+  YD+VGPVCET DFLGK+R+L
Sbjct: 300 ETKNFAIVDAGMNDLIRPSLYQAWQAIIPVDTRHVRESAVYDVVGPVCETGDFLGKEREL 359

Query: 357 VLQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDGNKTYLVRQREELSSLWALESVLP 416
            +  GDLLAVRS+GAYGF M+SNYN+RPR AEVMVDG+  ++VRQRE + SLWA ES+LP
Sbjct: 360 AIGAGDLLAVRSAGAYGFVMASNYNSRPRPAEVMVDGDAYHVVRQRESVESLWAGESLLP 419


Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 572
Number of extensions: 26
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 430
Length adjustment: 32
Effective length of query: 385
Effective length of database: 398
Effective search space:   153230
Effective search space used:   153230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_086511731.1 BZY95_RS20455 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.2651.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2651.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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