Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate WP_086511312.1 BZY95_RS18210 methionine synthase
Query= CharProtDB::CH_090726
(1227 letters)
>NCBI__GCF_002151265.1:WP_086511312.1
Length = 1239
Score = 1645 bits (4261), Expect = 0.0
Identities = 829/1234 (67%), Positives = 992/1234 (80%), Gaps = 12/1234 (0%)
Query: 2 SSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKP 61
S+ L +L ERIL+LDGGMGTMIQ+ +L EADFRGERF DWP +LKGNNDLL L+ P
Sbjct: 6 SALTATLTERLGERILMLDGGMGTMIQNAKLEEADFRGERFGDWPSELKGNNDLLALTCP 65
Query: 62 EVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTAR 121
+++ +H AY EAGADIIETNTFNST ++ ADY ME+L EIN +A+LARA D A
Sbjct: 66 DLVTRLHRAYLEAGADIIETNTFNSTRLSQADYGMEALVPEINRESARLARAACDAVAAE 125
Query: 122 TPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIE 181
T PRYVAGVLGPT+RTAS+SPDVNDPA RN+TFD L Y E+ +AL+EGGADLILIE
Sbjct: 126 TGV-PRYVAGVLGPTSRTASLSPDVNDPAKRNVTFDQLRDNYYEAAEALIEGGADLILIE 184
Query: 182 TVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEAL 241
T+FDTLNAKAA+FA++ F+ G LP+MISGTITDASGRTLSGQTTEAF+NS+RHA+ L
Sbjct: 185 TIFDTLNAKAAIFALEALFDDRGERLPVMISGTITDASGRTLSGQTTEAFWNSVRHAQPL 244
Query: 242 TFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQA 301
+ GLNCALG +ELR Y++ELS A+ +V+AHPNAGLPN FGEYD + MA + E+A +
Sbjct: 245 SIGLNCALGAEELRPYLEELSTKADTFVSAHPNAGLPNEFGEYDQTPEEMAAIVAEFASS 304
Query: 302 GFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVGE 361
G +NI+GGCCG+TP+HIAA+ A++G+APRK+PE P ACRL+GLEP NI + SLFVNVGE
Sbjct: 305 GLVNIIGGCCGSTPEHIAAIHAAIQGMAPRKVPERPRACRLAGLEPFNIEKGSLFVNVGE 364
Query: 362 RTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLIA 421
RTNVTGSA+FKRLI EE Y+ AL+VA QVENGAQIIDINMDEGML+++ AMVRFLNLIA
Sbjct: 365 RTNVTGSARFKRLIVEEDYTTALEVALDQVENGAQIIDINMDEGMLESQEAMVRFLNLIA 424
Query: 422 GEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAVV 481
GEPDIARVPIMIDSSKW++IE GLKC+QGK +VNSIS+KEG +AF+ A L RRYGAAVV
Sbjct: 425 GEPDIARVPIMIDSSKWEIIEAGLKCVQGKAVVNSISLKEGEEAFLEQATLCRRYGAAVV 484
Query: 482 VMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQD 541
VMAFDE GQADT ARK EIC+RAY++L E VGFPPEDIIFDPNIFA+ATGIEEH+NYA D
Sbjct: 485 VMAFDETGQADTFARKTEICQRAYELLIERVGFPPEDIIFDPNIFAIATGIEEHDNYAVD 544
Query: 542 FIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQ 601
FI A I+ LPHA++SGGVSNVSFSFRGNDPVREAIH+VFLY+AIR G+ MGIVNAGQ
Sbjct: 545 FIEATRWIREHLPHAMVSGGVSNVSFSFRGNDPVREAIHSVFLYHAIRAGLTMGIVNAGQ 604
Query: 602 LAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWRSWEVNK 661
LA+YDDLP ELR+AVEDV+LNRR DGTERL++LAEKY+G + A + EWRSWEV K
Sbjct: 605 LAVYDDLPEELREAVEDVVLNRRSDGTERLVDLAEKYKGDGS-GAAKKEDLEWRSWEVEK 663
Query: 662 RLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKS 721
R+E++LVKGIT FIE+DTE ARQ+A RPIEVIEGPLMDGMNVVGDLFG GKMFLPQVVKS
Sbjct: 664 RIEHALVKGITAFIEEDTELARQRAARPIEVIEGPLMDGMNVVGDLFGAGKMFLPQVVKS 723
Query: 722 ARVMKQAVAYLEPFIEASK-EQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDL 780
ARVMKQAVAYL PFIEA K E + GK+V+ATVKGDVHDIGKNIVGVVLQCNNYE++DL
Sbjct: 724 ARVMKQAVAYLIPFIEAEKSEDTQAKGKIVMATVKGDVHDIGKNIVGVVLQCNNYEVIDL 783
Query: 781 GVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKA 840
GVMVPAEKIL+TA++VNAD+IGLSGLITPSLDEMV+VAKEM+RQGF +PLLIGGATTSKA
Sbjct: 784 GVMVPAEKILQTARDVNADIIGLSGLITPSLDEMVHVAKEMKRQGFKLPLLIGGATTSKA 843
Query: 841 HTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPR 900
HTAVK+E Y P +YV +ASR VGV LLS T + +VA + EYE VR ++ +++P+
Sbjct: 844 HTAVKVEPQYDEPVIYVTDASRAVGVAGKLLSPTLKPAYVAEIKAEYEQVRERNAKRRPK 903
Query: 901 TPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVEA-SIETLRNYIDWTPFFMTWSLAGK 959
++ AR DW +YTPP G++ E IE L IDWTPFFM+W LAGK
Sbjct: 904 AADLSYAEARQRKLPIDWDSYTPPRPAITGLKVFEGYDIEELVERIDWTPFFMSWELAGK 963
Query: 960 YPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDD-IEIYRDET 1018
YP+I +D VVG A+ LF DA ML KL K + RGV+GL+PAN V DD IE+Y DE+
Sbjct: 964 YPKIFDDAVVGEAARNLFADAQQMLRKLIDGKHVEARGVIGLWPANSVDDDVIEVYADES 1023
Query: 1019 RTHVINVSHHLRQQTEKT-GFANYCLADFVAPKLSG------KADYIGAFAVTGGLEEDA 1071
R+ VI HH+RQQT K Y LADFVAP+ + D++G FAVT G +A
Sbjct: 1024 RSEVIARLHHIRQQTTKNRDGVCYSLADFVAPRYDADGNERDQLDWVGGFAVTTGHGVEA 1083
Query: 1072 LADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQ 1131
LA+ ++A DDY+ IMV+AL DRLAEAFAE +HERVRK +WGY P+E L N+ LI E YQ
Sbjct: 1084 LAERYKAAGDDYSAIMVQALTDRLAEAFAERMHERVRKEFWGYVPDETLDNDALIAEKYQ 1143
Query: 1132 GIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYA 1191
GIRPAPGYPACP+HTEK T+++LL+ ++ G++LTE+FAMWP A+VSGWYFSHP +KY++
Sbjct: 1144 GIRPAPGYPACPDHTEKRTLFQLLDATENAGIELTENFAMWPAAAVSGWYFSHPQAKYFS 1203
Query: 1192 VAQIQRDQVEDYARRKGMSVTEVERWLAPNLGYD 1225
+I RDQVE A+RKGMS+ E+ERWL+P L YD
Sbjct: 1204 TGKITRDQVEALAQRKGMSLEELERWLSPVLSYD 1237
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3831
Number of extensions: 156
Number of successful extensions: 9
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 1239
Length adjustment: 47
Effective length of query: 1180
Effective length of database: 1192
Effective search space: 1406560
Effective search space used: 1406560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Align candidate WP_086511312.1 BZY95_RS18210 (methionine synthase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.13195.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13195.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.