Align chorismate mutase (EC 5.4.99.5) (characterized)
to candidate WP_086511287.1 BZY95_RS18095 gamma subclass chorismate mutase AroQ
Query= BRENDA::Q2SY64 (202 letters) >NCBI__GCF_002151265.1:WP_086511287.1 Length = 197 Score = 95.9 bits (237), Expect = 4e-25 Identities = 61/141 (43%), Positives = 73/141 (51%), Gaps = 4/141 (2%) Query: 10 LRASLVAALLGCAALSAPRIAAADGDDTALTNLVALASQRLALAEPVAHWKWINRKPISD 69 L +LV L GC D D A+ ++ L +RL +A VA KW + PI Sbjct: 15 LAIALVLLLAGCQTQPPE---PPDEDKAAIDRMLVLIDERLDVAPLVAQSKWNSGAPIEA 71 Query: 70 PPREAALLTDVEKRATANGVDPAYARTFFDDQIAASKQLQNALFATW-RATHGPEGPAPD 128 P REA +L V + A A GVD A+AR FFD Q ASKQ+Q L W + P PD Sbjct: 72 PEREAQILDQVAEDAEAAGVDDAFARRFFDKQFEASKQIQRRLHHQWLQEGRSPFADPPD 131 Query: 129 LATSTRPQLDRLTQSLIAALA 149 LA RP LDRLT LI ALA Sbjct: 132 LAEEVRPVLDRLTPQLIEALA 152 Lambda K H 0.318 0.128 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 122 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 202 Length of database: 197 Length adjustment: 21 Effective length of query: 181 Effective length of database: 176 Effective search space: 31856 Effective search space used: 31856 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 45 (21.9 bits)
Align candidate WP_086511287.1 BZY95_RS18095 (gamma subclass chorismate mutase AroQ)
to HMM TIGR01806 (putative chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.22077.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22077.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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