Alignments for a candidate for proA in Billgrantia desiderata SP1

Align Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; GSA dehydrogenase; EC 1.2.1.41 (characterized)
to candidate WP_086508696.1 BZY95_RS04055 glutamate-5-semialdehyde dehydrogenase

Query= SwissProt::P07004
         (417 letters)



>NCBI__GCF_002151265.1:WP_086508696.1
          Length = 433

 Score =  362 bits (930), Expect = e-105
 Identities = 192/412 (46%), Positives = 275/412 (66%), Gaps = 4/412 (0%)

Query: 5   MGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLD 64
           +G AA+ A+ ++ +  + +KNR L  +A  L+ +   IL ANA D+A  RA+GL  A+LD
Sbjct: 25  LGQAARVAATQMRRAVTGDKNRALLAMAAHLQRRRSEILEANAADLARGRASGLEAALLD 84

Query: 65  RLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPN 124
           RLAL  AR+  + + + QV  L DPVG++       SG+++ + RVPLGVIG+IYE+RPN
Sbjct: 85  RLALNDARIDAMIEGLEQVAALPDPVGEIEGLRYRPSGIQVGQMRVPLGVIGIIYESRPN 144

Query: 125 VTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDRALV 184
           VT++ ASLCLK+GNA ILRGG E   +NAA  A I+D L+  GLP  AVQ +   DRA V
Sbjct: 145 VTMEAASLCLKSGNASILRGGSEARDSNAAIAACIRDGLRDAGLPETAVQVVATTDRAAV 204

Query: 185 SEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALKVIVN 244
            +++ M +Y+D++IPRGG  L +    ++ +PVI    GVCH+Y+D + +  +AL + VN
Sbjct: 205 GQLIAMPEYVDVIIPRGGKSLIERISREARVPVIKHLDGVCHVYIDATADPEKALAIAVN 264

Query: 245 AKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAKVVAV 304
           AKT R  TCNT+ETLLV+  +A++ LP L++  A  GV L     + A L      + A 
Sbjct: 265 AKTHRYGTCNTMETLLVDAPVAEALLPRLAQAYAAHGVELRGCERSRAILD----DIAAA 320

Query: 305 KAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDSSAV 364
             E++  E+L+  L V++V  ++ AI HI  +G+ H+DAI+T D   A+RF+ EVDSS+V
Sbjct: 321 SEEDWYAEYLAPVLAVRVVDGMEAAIEHIERYGSHHTDAIVTEDYGLARRFMAEVDSSSV 380

Query: 365 YVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIR 416
            VNASTRF DG ++GLGAE+ +ST KLHARGP+GLE LTT K++ +GD  +R
Sbjct: 381 MVNASTRFADGFEYGLGAEIGISTDKLHARGPVGLEGLTTRKYVVLGDGQVR 432


Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 452
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 433
Length adjustment: 32
Effective length of query: 385
Effective length of database: 401
Effective search space:   154385
Effective search space used:   154385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_086508696.1 BZY95_RS04055 (glutamate-5-semialdehyde dehydrogenase)
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))

Software error:

../bin/blast/fastacmd -i /tmp/list.29523.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29523.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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