Alignments for a candidate for proB in Billgrantia desiderata SP1

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate WP_086508023.1 BZY95_RS00405 glutamate 5-kinase

Query= BRENDA::P0A7B5
         (367 letters)



>NCBI__GCF_002151265.1:WP_086508023.1
          Length = 378

 Score =  303 bits (775), Expect = 7e-87
 Identities = 163/363 (44%), Positives = 235/363 (64%), Gaps = 2/363 (0%)

Query: 4   SQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYP 63
           ++ +VVK+G+++LT   R L+ A I   V Q A LH  G  +V+V+SGA+AAG   LG+ 
Sbjct: 15  ARRVVVKIGSALLTNDGRGLDEAAIGGWVDQIAALHRQGLEVVLVSSGAVAAGMVRLGWQ 74

Query: 64  ELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRA 123
             P+ +   Q  AAVGQ+ L Q +E  F+ +G+   Q+LLT  D+ +R+R+LNAR  LR 
Sbjct: 75  ARPSAVHELQAAAAVGQNGLTQCYEHHFARHGLLTAQVLLTHDDLSNRKRYLNARSALRT 134

Query: 124 LLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNP 183
           L+D  ++PVINEND V T EI+ GDND L AL A L  A+ L++LTDQ+GL+ ADPR NP
Sbjct: 135 LVDLRVIPVINENDTVVTDEIRFGDNDTLGALVANLLEAEALVILTDQEGLFDADPRHNP 194

Query: 184 QAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIG 243
           +A LI +    D AL A+AG     LG GGM+TK+QAA +A R+G  T+IA+G +P V+ 
Sbjct: 195 EASLISEGRADDPALAAMAGGG-GALGRGGMTTKVQAARLAARSGAVTVIASGRQPEVLT 253

Query: 244 DVMEGISVGTLFHAQATPLENRKRWIFG-APPAGEITVDEGATAAILERGSSLLPKGIKS 302
            + EG  +GTL   +  P+  RKRW+ G     G +T+D GA   +   GSSLL  G+K+
Sbjct: 254 RLAEGEPLGTLLRPEEAPMAARKRWLAGQLQVRGSLTLDAGAVKVLRGSGSSLLAVGVKA 313

Query: 303 VTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRD 362
           ++G+F RG+++   + +G+ IA G+  Y +D  RRI G  S +I+AILGY   P  +HRD
Sbjct: 314 LSGDFVRGDMVLCVDEQGQRIAKGLVNYGADEARRILGQPSHQIEAILGYMEAPELIHRD 373

Query: 363 DMI 365
           +++
Sbjct: 374 NLV 376


Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 382
Number of extensions: 16
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 378
Length adjustment: 30
Effective length of query: 337
Effective length of database: 348
Effective search space:   117276
Effective search space used:   117276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_086508023.1 BZY95_RS00405 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.5558.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5558.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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