Alignments for a candidate for proC in Billgrantia desiderata SP1

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate WP_086510436.1 BZY95_RS13455 pyrroline-5-carboxylate reductase

Query= SwissProt::P22008
         (273 letters)



>NCBI__GCF_002151265.1:WP_086510436.1
          Length = 274

 Score =  271 bits (694), Expect = 9e-78
 Identities = 141/270 (52%), Positives = 188/270 (69%), Gaps = 1/270 (0%)

Query: 5   RIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVADA 64
           R+ FIGAGNMA+++IGG+   G PA  I A+ P     A +   + I     N  AV DA
Sbjct: 4   RVTFIGAGNMASAIIGGMIDNGHPATAITATSPSDAFLAPVHERYGIRTNTDNQAAVRDA 63

Query: 65  DVVVLSVKPQAMKAVCQALAPALKPEQ-LIVSIAAGIPCASLEAWLGQPRPVVRCMPNTP 123
           D+VVL+VKPQ M+ VC+ L   L+ ++ LI+S+AAG+   SL+AW+G   P+VRCMPNTP
Sbjct: 64  DIVVLAVKPQVMREVCEGLRDTLQRQRPLIISVAAGLTAESLQAWMGGGLPLVRCMPNTP 123

Query: 124 ALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFLL 183
           +L+  GA+GLYA A+VS  Q  QA +LL AVG+  W++ EA +DAVTAVSGSGPAYFFL+
Sbjct: 124 SLVGAGAAGLYATAEVSDEQRAQATELLEAVGLVEWVEQEALLDAVTAVSGSGPAYFFLM 183

Query: 184 MQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKS 243
            +AM +AG KLGL  ETA RL +QTALGAA+MA  SE+ P  L+R V SP GTTE A++ 
Sbjct: 184 FEAMEEAGVKLGLPAETARRLAIQTALGAARMAQQSELTPDRLKRNVMSPGGTTERAVEH 243

Query: 244 FQANGFEALVEQALNAASQRSAELAEQLGQ 273
            +  G   +V  A++A + R+ E+AE+LGQ
Sbjct: 244 MEQAGLRGIVADAMDACAARAREMAEELGQ 273


Lambda     K      H
   0.315    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 208
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 274
Length adjustment: 25
Effective length of query: 248
Effective length of database: 249
Effective search space:    61752
Effective search space used:    61752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate WP_086510436.1 BZY95_RS13455 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.24298.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24298.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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