Alignments for a candidate for serB in Billgrantia desiderata SP1

Align Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 (characterized)
to candidate WP_086511903.1 BZY95_RS21340 phosphoserine phosphatase SerB

Query= SwissProt::Q9S281
         (410 letters)



>NCBI__GCF_002151265.1:WP_086511903.1
          Length = 406

 Score =  251 bits (640), Expect = 4e-71
 Identities = 165/401 (41%), Positives = 226/401 (56%), Gaps = 23/401 (5%)

Query: 12  LLVKIFGKDRPGITAGLFDTLAAYSVDVVDIEQVVTRGRIVLCALVTEPPRGLE--GDLR 69
           LL++  G  RPG  AGL   LA     ++DI Q VT G + L ALV     GLE   DL 
Sbjct: 5   LLIRATGAARPGQLAGLGQALARSGARLLDINQSVTFGMVSLEALV-----GLEHDSDLE 59

Query: 70  ATVHSWAESLKLQAEIISGIGDNRPRGFG-----RSLVTVLGHPLTAEATAAIAARITES 124
             ++   +SL L  + I    ++  R        R ++T+L   L A   A + A   E 
Sbjct: 60  GALNEVGDSLGLDVQAIQVSAEDYQRWSSQASEPRLILTLLAPHLPAGILAEVGALTAEH 119

Query: 125 GSNIDRIFRLA-KYPV--------TAVEFAVSG--VETEPLRTALATEAAALGVDIAVVA 173
           G  ++ I RL+ + P+        + VE  + G  ++ + LR       A  GVDIA+  
Sbjct: 120 GLTVELIHRLSGREPLDGGVPRFGSCVECWLRGEEIDLDSLREKALALGAMHGVDIAIQE 179

Query: 174 AGLHRRAQRLVVMDVDSTLIQDEVIELFAAHAGCEDEVAEVTAAAMRGELDFEQSLHARV 233
             + RR +RLV  D+DSTLIQ EVI+  A   G  +EVA VT  AMRGELDF+QS   R+
Sbjct: 180 DSIWRRHRRLVCFDMDSTLIQAEVIDELARRHGVYEEVAAVTERAMRGELDFQQSFRERM 239

Query: 234 ALLAGLDASVVDKVRAEVRLTPGARTLIRTLKRLGYQVGVVSGGFTQVTDALQEQLGLDF 293
           A L GLD +V+ ++  E+ L  G   L++ LKRLGY+  ++SGGFT     LQE LG D 
Sbjct: 240 AKLKGLDEAVLAEIAEELPLMDGVERLMKHLKRLGYRTAILSGGFTYFARHLQETLGFDE 299

Query: 294 AQANTLEIVDGRLTGRVTGEIVDRAGKARLLRRFAAAAGVPLSQTVAIGDGANDLDMLNA 353
             AN L I +G++TG V   I+D + KA LLR  AA  G+ + QT+A+GDGANDL ML A
Sbjct: 300 IHANELVIENGKVTGEVREPILDASRKAELLREIAAREGLAMEQTIAVGDGANDLKMLAA 359

Query: 354 AGLGVAFNAKPVVREAAHTAVNVPFLDTVLYLLGITREEVE 394
           AGLG+AF AKP+VR  A  +++   +D VLYL+G    ++E
Sbjct: 360 AGLGIAFRAKPLVRSQARQSISTLGIDAVLYLMGYREGDLE 400


Lambda     K      H
   0.319    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 387
Number of extensions: 18
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 406
Length adjustment: 31
Effective length of query: 379
Effective length of database: 375
Effective search space:   142125
Effective search space used:   142125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_086511903.1 BZY95_RS21340 (phosphoserine phosphatase SerB)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.1821.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1821.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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