Alignments for a candidate for serC in Billgrantia desiderata SP1

Align phosphoserine transaminase (EC 2.6.1.52) (characterized)
to candidate WP_086508941.1 BZY95_RS05315 3-phosphoserine/phosphohydroxythreonine transaminase

Query= BRENDA::P23721
         (362 letters)



>NCBI__GCF_002151265.1:WP_086508941.1
          Length = 361

 Score =  368 bits (945), Expect = e-106
 Identities = 192/363 (52%), Positives = 245/363 (67%), Gaps = 3/363 (0%)

Query: 1   MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDL 60
           M + +NF +GPA LP  VL++A++EL D+ G G SVME+SHR  EF+ +AE+AE D R+L
Sbjct: 1   MTRHYNFCAGPAALPTPVLERAREELLDYQGRGLSVMEMSHRSPEFVAIAEQAEADLREL 60

Query: 61  LNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFD 120
           L VP NYKVLF  GG   QF+ VP+N+LG    A+++  G W   A+ EA++        
Sbjct: 61  LAVPENYKVLFLQGGASLQFSMVPMNLLGQGGAANFLYTGIWGKKALAEARQLGFAVHMA 120

Query: 121 AKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTIL 180
                 G   V    +  LS +AAY+HY  NETI G+  D  PD G  +V   D+SS+IL
Sbjct: 121 GSSEPSGHAEVPTQADIALSADAAYLHYTANETIGGLEFDYIPDVGVPLV--CDYSSSIL 178

Query: 181 SRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNT 240
           + P+DVSR+GVIYAGAQKNIGPAGLT+V+VR+DLL +     PS+ DY  + + GSM NT
Sbjct: 179 AEPLDVSRFGVIYAGAQKNIGPAGLTLVLVRDDLLDRRCPRIPSLFDYQAMAEAGSMVNT 238

Query: 241 PPTFAWYLSGLVFKWLKAN-GGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRSRMN 299
           PPT+AWYL+GLVF+WLK + GG+  M  IN +KA  LY  ID S FY N +A  NRSRMN
Sbjct: 239 PPTYAWYLAGLVFQWLKHDIGGLEAMATINARKAAKLYAAIDASGFYSNPIAPRNRSRMN 298

Query: 300 VPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFER 359
           VPF LAD++LDK FL E+  AGL  L GHR VGGMRAS+YNA+P   V  L DFM +FE+
Sbjct: 299 VPFVLADASLDKTFLAEAEQAGLLNLAGHRSVGGMRASLYNAVPEAAVDTLIDFMADFEQ 358

Query: 360 RHG 362
           R G
Sbjct: 359 RRG 361


Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 383
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 361
Length adjustment: 29
Effective length of query: 333
Effective length of database: 332
Effective search space:   110556
Effective search space used:   110556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_086508941.1 BZY95_RS05315 (3-phosphoserine/phosphohydroxythreonine transaminase)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.15343.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15343.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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