Alignments for a candidate for thrB in Billgrantia desiderata SP1

Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (characterized)
to candidate WP_086508660.1 BZY95_RS03820 homoserine kinase

Query= SwissProt::P29364
         (316 letters)



>NCBI__GCF_002151265.1:WP_086508660.1
          Length = 320

 Score =  269 bits (688), Expect = 6e-77
 Identities = 139/308 (45%), Positives = 185/308 (60%), Gaps = 1/308 (0%)

Query: 1   MSVFTPLERSTLEAFLAPYDLGRLRDFRGIAEGSENSNFFVSLEHGEFVLTLVERGPVQD 60
           M+VFTPL  + +  FL  +D+G L    G+A G+ENS FFV+ +  E VLTL E+G  ++
Sbjct: 1   MAVFTPLSDAQVAEFLRRFDVGELVSLAGVAGGTENSTFFVTTDRHELVLTLFEQGEHEE 60

Query: 61  LPFFIELLDVLHEDGLPVPYALRTRDGEALRRLEGKPALLQPRLAGRHERQPNAHHCQEV 120
           LPFF+ELLD L E  LPVP  +  R+G AL  L GKP+LL PRL GRH   PN   C+ +
Sbjct: 61  LPFFVELLDYLDEHRLPVPGPVHDREGIALHSLAGKPSLLFPRLPGRHPMSPNLTQCRAL 120

Query: 121 GDLLGHLHAATRGRILERPSDRGLPWMLEQGANLAPRLPEQARALLAPALAEIAALDAER 180
           GD LG +H  ++     RP+ R L W+      +   L  + + L+   +     +  + 
Sbjct: 121 GDALGRMHVVSQHFPGHRPNPRDLNWLTAMHHKVLGYLSPEDQTLMKDEVEIYQGVFGDA 180

Query: 181 PALPRANLHADLFRDNVLFDGPHLAGLIDFYNACSGWMLYDLAITLNDWCSNTDGSLDPA 240
           P LP   LH DLFRDN LF+   L G+IDFYN C+G +L+DLAI +NDW S  DG LD A
Sbjct: 181 PELPHGALHGDLFRDNTLFEDDRLGGIIDFYNGCTGDLLFDLAIVINDWASGPDGRLDRA 240

Query: 241 RARALLAAYANRRPFTALEAEHWPSMLRVACVRFWLSRLIAAEAF-AGQDVLIHDPAEFE 299
           R  A+++AY  RRP TA E E WP+MLR+  +R+WLSRL+         D+  HDPA+F 
Sbjct: 241 RHDAIISAYQARRPLTATEREVWPTMLRMTALRYWLSRLLVVYVDPPAHDLTPHDPAQFH 300

Query: 300 IRLAQRQN 307
             L  R N
Sbjct: 301 TILTARLN 308


Lambda     K      H
   0.324    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 321
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 320
Length adjustment: 27
Effective length of query: 289
Effective length of database: 293
Effective search space:    84677
Effective search space used:    84677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate WP_086508660.1 BZY95_RS03820 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.27472.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27472.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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