Alignments for a candidate for thrC in Billgrantia desiderata SP1

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_086508981.1 BZY95_RS05575 threonine synthase

Query= BRENDA::Q8YFS0
         (463 letters)



>NCBI__GCF_002151265.1:WP_086508981.1
          Length = 464

 Score =  458 bits (1179), Expect = e-133
 Identities = 250/467 (53%), Positives = 319/467 (68%), Gaps = 10/467 (2%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60
           M+Y+STRG+AP L F + +L G+A DGGLY+P+  PQ + E++  + G SY EVA  V+ 
Sbjct: 1   MRYISTRGQAPALSFEEVVLTGMASDGGLYVPETIPQLSREELAGMAGLSYAEVAFRVMR 60

Query: 61  PFTGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLA 120
           PF  GEI    F  +VR+AY TF HDAV PL Q DAN F+LELFHGPTLAFKDVA+QLL 
Sbjct: 61  PFVNGEIDDETFRGIVRDAYATFSHDAVVPLNQLDANHFLLELFHGPTLAFKDVALQLLG 120

Query: 121 RMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSS 180
           R++D+ LA+RGERA I+GATSGDTG AAIE     DN DIFIL P+ RVS VQ+RQMTS 
Sbjct: 121 RILDHFLAKRGERAVIMGATSGDTGSAAIEGCRHCDNLDIFILHPHNRVSEVQRRQMTSV 180

Query: 181 GFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALS 240
              NV  ++IEGNFDD Q +VK  F D  F     L  VNSINWARIM Q+VYY  A ++
Sbjct: 181 LADNVFNIAIEGNFDDAQAMVKASFADQGFLGGTRLVAVNSINWARIMAQIVYYVAAGVA 240

Query: 241 LGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGV 300
           LGAP R VSF VP+ NFG++FAGY+A RMGLP++Q IIATN NDIL RT+    +  + +
Sbjct: 241 LGAPHRQVSFCVPSANFGNVFAGYMAYRMGLPVKQFIIATNANDILHRTIADNDFSKQEL 300

Query: 301 AQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSA 360
             T +PSMDI +SSNFERLLFEA+ RD AAV  L+ G  QS    ++E PL  +R+ F++
Sbjct: 301 KATLAPSMDIVVSSNFERLLFEAYERDGAAVAALL-GRFQSEPTALAEAPLERLRALFAS 359

Query: 361 GRSTVDETAATIESVLSKDGY----LLDPHSAIGVKVA-REKASGTAPMVVLATAHPAKF 415
              +VD+  ATI  V+ +  +    +LDPH+A G + A R +A    PM+ LATAHPAKF
Sbjct: 360 --HSVDD--ATILEVIREAHHRTKEVLDPHTATGYRAAERARADAETPMITLATAHPAKF 415

Query: 416 PDAVKAACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHHSR 462
            +AV  A      LP  + DL++R+E +TVL  EL  V+ +V  + R
Sbjct: 416 AEAVVKAGFPGVPLPPHMDDLLEREERYTVLPAELAKVQAFVAENRR 462


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 534
Number of extensions: 22
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 464
Length adjustment: 33
Effective length of query: 430
Effective length of database: 431
Effective search space:   185330
Effective search space used:   185330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_086508981.1 BZY95_RS05575 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.12087.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12087.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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