Alignments for a candidate for trpA in Billgrantia desiderata SP1

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_086508781.1 BZY95_RS04480 tryptophan synthase subunit alpha

Query= uniprot:M4NLA4
         (266 letters)



>NCBI__GCF_002151265.1:WP_086508781.1
          Length = 271

 Score =  277 bits (709), Expect = 1e-79
 Identities = 146/267 (54%), Positives = 180/267 (67%), Gaps = 2/267 (0%)

Query: 1   MSRIDRRFAALKAANRTGLIPFVTAGDPSPEHMVALMHALVDAGADLIELGVPFSDPMAD 60
           M+RID+RFA LKA  R  LIPF+TAGDP+P++ V  MHALV+AGAD+IELGVPFSDPMAD
Sbjct: 1   MNRIDKRFAELKAQGRRALIPFITAGDPAPQYTVGFMHALVEAGADVIELGVPFSDPMAD 60

Query: 61  GPVIQHASERAIAKGVGLADVLGWVAAFRQHDADTPIVLMGYLNPIETHGYARFAGEAVQ 120
           GPVIQ A ERA+   V L  +   V  FRQ D+DTP+VLMGYLNP+E  G   FA +A  
Sbjct: 61  GPVIQKACERALKHNVRLTHLFEMVREFRQRDSDTPVVLMGYLNPVERIGLEAFADQAAA 120

Query: 121 AGVDGVLLVDCPLEESAVLQP-LRDAGLQRILLAAPTTEPSRMAQLCGSAEGFLYYVSFA 179
           AG+DGVL VD P EE+    P L+  GL  I L APTT   R A +C   EG+LYYV+  
Sbjct: 121 AGIDGVLTVDMPPEEADEFGPILKQRGLASIFLVAPTTSSERAATICAHGEGYLYYVALK 180

Query: 180 GITGAAHLSTGDIAARVADVRARAKAPVAVGFGIRDAASAKAIAGFADAVVIGSALVDRL 239
           G+TGAA L+  D+A  +A +R   + P+ VGFGIRD ASA  +   AD V++GSALV R+
Sbjct: 181 GVTGAATLNAADVAEHLAPLRGLTELPLCVGFGIRDGASAAEVGKVADGVIVGSALVSRI 240

Query: 240 AGATDAGE-ITRRTQAFLAPIRAALDA 265
           A   +  E I    +A L  +R ALDA
Sbjct: 241 ADNAERPEAIADELKAVLGEMRQALDA 267


Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 255
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 271
Length adjustment: 25
Effective length of query: 241
Effective length of database: 246
Effective search space:    59286
Effective search space used:    59286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_086508781.1 BZY95_RS04480 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.15661.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15661.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.