Alignments for a candidate for trpA in Billgrantia desiderata SP1

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_086511467.1 BZY95_RS19070 tryptophan synthase subunit alpha

Query= uniprot:M4NLA4
         (266 letters)



>NCBI__GCF_002151265.1:WP_086511467.1
          Length = 273

 Score =  227 bits (579), Expect = 2e-64
 Identities = 121/242 (50%), Positives = 160/242 (66%), Gaps = 1/242 (0%)

Query: 2   SRIDRRFAALKAANRTGLIPFVTAGDPSPEHMVALMHALVDAGADLIELGVPFSDPMADG 61
           +R+D  FAALKA  R  L+ +VTAGDP  E  + ++  L  AGAD+IE+G+PFSDPMADG
Sbjct: 5   TRLDECFAALKAEQRPALVTYVTAGDPDFETSLKILQGLPAAGADVIEIGMPFSDPMADG 64

Query: 62  PVIQHASERAIAKGVGLADVLGWVAAFRQHDADTPIVLMGYLNPIETHGYARFAGEAVQA 121
           P IQ A+ RA+  G  +   L  V AFRQ D+ TP+VLMGY NPI  +G ARF  +A +A
Sbjct: 65  PTIQKAALRALGSGQTMTRTLELVHAFRQQDSQTPLVLMGYYNPIHRYGVARFLADAARA 124

Query: 122 GVDGVLLVDCPLE-ESAVLQPLRDAGLQRILLAAPTTEPSRMAQLCGSAEGFLYYVSFAG 180
           GVDG+++VD P E +  +  P R+ G+  I LA PTT+  R+ ++  +A GFLY V   G
Sbjct: 125 GVDGLIVVDLPPEHDDELCLPAREHGIAFIRLATPTTDAKRLPRVLNNASGFLYCVLVNG 184

Query: 181 ITGAAHLSTGDIAARVADVRARAKAPVAVGFGIRDAASAKAIAGFADAVVIGSALVDRLA 240
           ITG +     D+   V  +R R++ PVAVGFGIR AA A AI  F+DAVV+GSALV+ + 
Sbjct: 185 ITGGSAPPPQDVERMVGQLRERSRLPVAVGFGIRTAAQAAAIGRFSDAVVVGSALVEAIE 244

Query: 241 GA 242
            A
Sbjct: 245 SA 246


Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 212
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 273
Length adjustment: 25
Effective length of query: 241
Effective length of database: 248
Effective search space:    59768
Effective search space used:    59768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_086511467.1 BZY95_RS19070 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.650.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.650.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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