Alignments for a candidate for trpD_2 in Billgrantia desiderata SP1

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate WP_086511634.1 BZY95_RS19950 anthranilate phosphoribosyltransferase

Query= SwissProt::Q8PD71
         (345 letters)



>NCBI__GCF_002151265.1:WP_086511634.1
          Length = 340

 Score =  320 bits (820), Expect = 3e-92
 Identities = 164/318 (51%), Positives = 218/318 (68%), Gaps = 1/318 (0%)

Query: 6   QQALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMR 65
           + A+   +    +  D+   +M+QIM GE SDA +   L GL +K ET  EI  AA VMR
Sbjct: 4   RDAIAAVMRRENLSFDQTHAVMQQIMTGEASDAQIGGFLVGLAMKGETAEEIGAAAQVMR 63

Query: 66  EFSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSA 125
           E  +RV +    ++VDIVGTGGDG++ FN+ST + FVAAA GA+VAKHGNRSVSS SGSA
Sbjct: 64  ELMKRVHLQRSENVVDIVGTGGDGANLFNVSTASSFVAAASGAQVAKHGNRSVSSSSGSA 123

Query: 126 DALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPL 185
           D  +  G  ++L+PEQVA  +   G+GFM+AP HHPAM+     RREMGVRT+FNILGPL
Sbjct: 124 DLFDMAGIHLDLRPEQVARCIEHVGVGFMFAPNHHPAMRFAIGPRREMGVRTLFNILGPL 183

Query: 186 TNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVGELRDG 245
           TNPAG+PN ++GV+  +LV + A VL++LG+   +VV   DG+DE+SL A T V EL+DG
Sbjct: 184 TNPAGAPNQVLGVYSAELVPLMAEVLRQLGSRHVMVVHAEDGLDEISLAAPTQVAELKDG 243

Query: 246 QVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALYVA 305
           ++  Y + PEDFGI   A   LKV  A +S  ++ + L    GPA DIV+LNAGAALY A
Sbjct: 244 EIRRYTIAPEDFGIERQALSPLKVVSAEDSLRLVREALVG-EGPAADIVSLNAGAALYCA 302

Query: 306 GVADSIADGIVRARQVLA 323
           GVAD++ +G++ A+   A
Sbjct: 303 GVADTLKEGVMMAQDAQA 320


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 355
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 340
Length adjustment: 29
Effective length of query: 316
Effective length of database: 311
Effective search space:    98276
Effective search space used:    98276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_086511634.1 BZY95_RS19950 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.26150.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26150.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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