Alignments for a candidate for cmutase in Billgrantia desiderata SP1

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_086508931.1 BZY95_RS05310 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_002151265.1:WP_086508931.1
          Length = 363

 Score =  516 bits (1328), Expect = e-151
 Identities = 260/361 (72%), Positives = 299/361 (82%), Gaps = 3/361 (0%)

Query: 5   DQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHI 64
           + L  LR RID +D  IL LIS RA CA++VA VKT S    + AVFYRPEREA VL+ I
Sbjct: 6   NNLDTLRQRIDEIDNDILRLISARAECAKQVAEVKTKS---DKGAVFYRPEREAQVLRRI 62

Query: 65  MELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPM 124
           MELN+GPL++EEMARLFREIMS+CLALEQP +VAYLGPEGTF+Q AALKHFG S +S PM
Sbjct: 63  MELNQGPLNSEEMARLFREIMSACLALEQPTKVAYLGPEGTFTQQAALKHFGQSAVSMPM 122

Query: 125 AAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGE 184
           AAIDEVFREV AGAVN+GVVPVENSTEG V+HTLDSF++  I ICGEV LRIHHHLLV +
Sbjct: 123 AAIDEVFREVEAGAVNYGVVPVENSTEGVVSHTLDSFMDSSIRICGEVVLRIHHHLLVAD 182

Query: 185 TTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMA 244
           TT  D+++R+YSH QSLAQCRKWLDAHYP  ERV VSSNA+AAK +K EW+SAAIAGDMA
Sbjct: 183 TTLRDKVSRVYSHPQSLAQCRKWLDAHYPRAERVPVSSNAEAAKMIKGEWHSAAIAGDMA 242

Query: 245 AQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMPFH 304
           A+LYGL K+AEKIEDRP NSTRFLIIGSQ VP +G+DKTSI+V+MRN+PGALHELL PFH
Sbjct: 243 AKLYGLEKVAEKIEDRPDNSTRFLIIGSQHVPMSGEDKTSIVVAMRNQPGALHELLEPFH 302

Query: 305 SNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYPKAV 364
            + IDLTR+ETRPSR+G W YVFFID  GH  +P +  VLE++   A  LKVLGSYP  V
Sbjct: 303 RHSIDLTRLETRPSRTGVWNYVFFIDFKGHVDEPRVAAVLEEVRLRASELKVLGSYPVGV 362

Query: 365 L 365
           L
Sbjct: 363 L 363


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 442
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 363
Length adjustment: 29
Effective length of query: 336
Effective length of database: 334
Effective search space:   112224
Effective search space used:   112224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_086508931.1 BZY95_RS05310 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.9970.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9970.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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