Align chorismate mutase (EC 5.4.99.5) (characterized)
to candidate WP_086511287.1 BZY95_RS18095 gamma subclass chorismate mutase AroQ
Query= BRENDA::Q2SY64
(202 letters)
>NCBI__GCF_002151265.1:WP_086511287.1
Length = 197
Score = 95.9 bits (237), Expect = 4e-25
Identities = 61/141 (43%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 10 LRASLVAALLGCAALSAPRIAAADGDDTALTNLVALASQRLALAEPVAHWKWINRKPISD 69
L +LV L GC D D A+ ++ L +RL +A VA KW + PI
Sbjct: 15 LAIALVLLLAGCQTQPPE---PPDEDKAAIDRMLVLIDERLDVAPLVAQSKWNSGAPIEA 71
Query: 70 PPREAALLTDVEKRATANGVDPAYARTFFDDQIAASKQLQNALFATW-RATHGPEGPAPD 128
P REA +L V + A A GVD A+AR FFD Q ASKQ+Q L W + P PD
Sbjct: 72 PEREAQILDQVAEDAEAAGVDDAFARRFFDKQFEASKQIQRRLHHQWLQEGRSPFADPPD 131
Query: 129 LATSTRPQLDRLTQSLIAALA 149
LA RP LDRLT LI ALA
Sbjct: 132 LAEEVRPVLDRLTPQLIEALA 152
Lambda K H
0.318 0.128 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 197
Length adjustment: 21
Effective length of query: 181
Effective length of database: 176
Effective search space: 31856
Effective search space used: 31856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)
Align candidate WP_086511287.1 BZY95_RS18095 (gamma subclass chorismate mutase AroQ)
to HMM TIGR01806 (putative chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.7310.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7310.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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