Alignments for a candidate for ilvC in Billgrantia desiderata SP1

Align Ketol-acid reductoisomerase (NADP(+)); KARI; Acetohydroxy-acid isomeroreductase; AHIR; Alpha-keto-beta-hydroxylacyl reductoisomerase; Ketol-acid reductoisomerase type 1; Ketol-acid reductoisomerase type I; EC 1.1.1.86 (characterized)
to candidate WP_086511936.1 BZY95_RS21515 ketol-acid reductoisomerase

Query= SwissProt::Q9HVA2
         (338 letters)



>NCBI__GCF_002151265.1:WP_086511936.1
          Length = 338

 Score =  562 bits (1448), Expect = e-165
 Identities = 277/338 (81%), Positives = 301/338 (89%)

Query: 1   MRVFYDKDCDLSIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHG 60
           M V+YDKDCDLS+IQGKKV I+GYGSQGHAHA NLK+SGVDVTV LR GS++ AKAE  G
Sbjct: 1   MHVYYDKDCDLSLIQGKKVTIVGYGSQGHAHANNLKESGVDVTVALRPGSSSAAKAEGAG 60

Query: 61  LKVADVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVPRA 120
           LKVA V+ A  AADVVM+L PDE Q  +Y+ +IEPNLK+GATLAFAHGF+IHYNQ+ PR 
Sbjct: 61  LKVASVEEACKAADVVMVLAPDENQKAIYENQIEPNLKQGATLAFAHGFNIHYNQIEPRK 120

Query: 121 DLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTGIIE 180
           DLDVIM+APKAPGHTVRSEFVKGGGIPDLIAI+QDASG AK +ALSYA  +GGGR+GIIE
Sbjct: 121 DLDVIMVAPKAPGHTVRSEFVKGGGIPDLIAIHQDASGKAKELALSYAAAIGGGRSGIIE 180

Query: 181 TTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYE 240
           TTFKDETETDLFGEQAVLCGG VELVKAGFETL EAGYAPEMAYFECLHELKLIVDLMYE
Sbjct: 181 TTFKDETETDLFGEQAVLCGGAVELVKAGFETLTEAGYAPEMAYFECLHELKLIVDLMYE 240

Query: 241 GGIANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPS 300
           GGIANMNYSISNNAEYGEYVTGPEVIN +SR AMRNALKRIQ GEYAKMFI EG  NYPS
Sbjct: 241 GGIANMNYSISNNAEYGEYVTGPEVINEQSRQAMRNALKRIQTGEYAKMFIQEGNTNYPS 300

Query: 301 MTAYRRNNAAHPIEQIGEKLRAMMPWIAANKIVDKSKN 338
           MTA RR NA H IEQ+G KLR MMPWIAAN++VDK+KN
Sbjct: 301 MTARRRLNAEHEIEQVGAKLRGMMPWIAANQLVDKTKN 338


Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 454
Number of extensions: 4
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 338
Length adjustment: 28
Effective length of query: 310
Effective length of database: 310
Effective search space:    96100
Effective search space used:    96100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_086511936.1 BZY95_RS21515 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.2576.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2576.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.