Align dihydroxyacid dehydratase (characterized)
to candidate WP_086509434.1 BZY95_RS08080 dihydroxy-acid dehydratase
Query= CharProtDB::CH_024768
(616 letters)
>NCBI__GCF_002151265.1:WP_086509434.1
Length = 614
Score = 933 bits (2412), Expect = 0.0
Identities = 468/615 (76%), Positives = 528/615 (85%), Gaps = 3/615 (0%)
Query: 1 MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLV 60
MP+YRS TTT GRNMAGARALWRATGM D DF KPIIAV NSFTQFVPGHVHL+D+G+LV
Sbjct: 1 MPQYRSRTTTAGRNMAGARALWRATGMKDEDFHKPIIAVANSFTQFVPGHVHLKDMGQLV 60
Query: 61 AEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120
A +IE AGGVAKEFNTIAVDDGIAMGH GMLYSLPSR++IADSVEYMVNAHCADA+VCIS
Sbjct: 61 AREIEKAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRDIIADSVEYMVNAHCADALVCIS 120
Query: 121 NCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQ 180
NCDKITPGMLMA++RLNIPVIFVSGGPMEAGKTKL D LDLVDAM+ AD V D
Sbjct: 121 NCDKITPGMLMAAMRLNIPVIFVSGGPMEAGKTKLLDH--GLDLVDAMVMAADDSVDDET 178
Query: 181 SDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIV 240
+VERSACPTCGSCSGMFTANSMNCLTEALGL+ PGNG++LATHADR++LF AG RIV
Sbjct: 179 LAEVERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGTVLATHADRRRLFETAGHRIV 238
Query: 241 ELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSD 300
EL KRYYE ++ LPR I SKAAF+NAMTLDIAMGGSTNT+LHLLAAAQEAEIDFTM+D
Sbjct: 239 ELAKRYYEGDEAHLLPRAIGSKAAFKNAMTLDIAMGGSTNTILHLLAAAQEAEIDFTMAD 298
Query: 301 IDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQT 360
ID+LSR+VPQLCKVAP+TQKYH+EDVHRAGG++ ILGELDRAG+L+ V V G +L +
Sbjct: 299 IDRLSREVPQLCKVAPNTQKYHIEDVHRAGGIMAILGELDRAGVLDTRVPTVYGDSLKEA 358
Query: 361 LEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEHAYSKDG 420
L+++D+M V F+AGP G+ T AFSQ RW TLD DRANGCIR LEHA+S++G
Sbjct: 359 LDEWDIMRNPSPEVVEFFKAGPGGVPTQVAFSQSARWPTLDGDRANGCIRDLEHAFSREG 418
Query: 421 GLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRY 480
GLAVLYGN A +GC+VKTAGVDDSIL F GPA V ESQD AVE IL G+V G+VVVIRY
Sbjct: 419 GLAVLYGNIAVDGCVVKTAGVDDSILVFEGPAHVVESQDQAVEHILAGQVKEGEVVVIRY 478
Query: 481 EGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGL 540
EGPKGGPGMQEMLYPTS+LKS GLGKACAL+TDGRFSGGTSGLSIGHVSPEAA+GG+IGL
Sbjct: 479 EGPKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHVSPEAAAGGAIGL 538
Query: 541 IEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTPK-NRERQVSFALRAYASL 599
+ GD+I IDIPNR I +++SD+ELAARREA++ARG +AW P R R+VS AL+AYA L
Sbjct: 539 VRSGDIIRIDIPNRRIDVKLSDSELAARREAEEARGSQAWKPSIQRVRKVSAALKAYALL 598
Query: 600 ATSADKGAVRDKSKL 614
ATSADKGAVRD SKL
Sbjct: 599 ATSADKGAVRDLSKL 613
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1243
Number of extensions: 40
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 614
Length adjustment: 37
Effective length of query: 579
Effective length of database: 577
Effective search space: 334083
Effective search space used: 334083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate WP_086509434.1 BZY95_RS08080 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.15355.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15355.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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