GapMind for catabolism of small carbon sources

 

Protein WP_068167536.1 in Hydrogenophaga taeniospiralis CCUG 15921 NBRC 102512

Annotation: NCBI__GCF_001592305.1:WP_068167536.1

Length: 507 amino acids

Source: GCF_001592305.1 in NCBI

Candidate for 27 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-fucose catabolism HSERO_RS05250 hi Ribose import ATP-binding protein RbsA; EC 7.5.2.7 (characterized, see rationale) 70% 95% 683.3 Inositol transport system ATP-binding protein 48% 441.8
myo-inositol catabolism PS417_11890 hi Inositol transport system ATP-binding protein (characterized) 48% 95% 441.8 Galactose/methyl galactoside import ATP-binding protein MglA aka B2149, component of Galactose/glucose (methyl galactoside) porter 44% 424.5
D-xylose catabolism xylK_Tm med Ribose import ATP-binding protein RbsA 1; EC 7.5.2.7 (characterized, see rationale) 46% 96% 441 Inositol transport system ATP-binding protein 48% 441.8
D-mannose catabolism HSERO_RS03640 med Ribose import ATP-binding protein RbsA; EC 7.5.2.7 (characterized, see rationale) 47% 95% 434.1 Inositol transport system ATP-binding protein 48% 441.8
D-cellobiose catabolism mglA med Galactose/methyl galactoside import ATP-binding protein MglA aka B2149, component of Galactose/glucose (methyl galactoside) porter (characterized) 44% 99% 424.5 Inositol transport system ATP-binding protein 48% 441.8
D-galactose catabolism mglA med Galactose/methyl galactoside import ATP-binding protein MglA aka B2149, component of Galactose/glucose (methyl galactoside) porter (characterized) 44% 99% 424.5 Inositol transport system ATP-binding protein 48% 441.8
D-glucose catabolism mglA med Galactose/methyl galactoside import ATP-binding protein MglA aka B2149, component of Galactose/glucose (methyl galactoside) porter (characterized) 44% 99% 424.5 Inositol transport system ATP-binding protein 48% 441.8
lactose catabolism mglA med Galactose/methyl galactoside import ATP-binding protein MglA aka B2149, component of Galactose/glucose (methyl galactoside) porter (characterized) 44% 99% 424.5 Inositol transport system ATP-binding protein 48% 441.8
D-maltose catabolism mglA med Galactose/methyl galactoside import ATP-binding protein MglA aka B2149, component of Galactose/glucose (methyl galactoside) porter (characterized) 44% 99% 424.5 Inositol transport system ATP-binding protein 48% 441.8
sucrose catabolism mglA med Galactose/methyl galactoside import ATP-binding protein MglA aka B2149, component of Galactose/glucose (methyl galactoside) porter (characterized) 44% 99% 424.5 Inositol transport system ATP-binding protein 48% 441.8
trehalose catabolism mglA med Galactose/methyl galactoside import ATP-binding protein MglA aka B2149, component of Galactose/glucose (methyl galactoside) porter (characterized) 44% 99% 424.5 Inositol transport system ATP-binding protein 48% 441.8
D-ribose catabolism rbsA med ribose transport, ATP-binding protein RbsA; EC 3.6.3.17 (characterized) 47% 98% 420.2 Inositol transport system ATP-binding protein 48% 441.8
D-xylose catabolism xylG med Monosaccharide-transporting ATPase, component of Glucose porter. Also bind xylose (Boucher and Noll 2011). Induced by glucose (Frock et al. 2012). Directly regulated by glucose-responsive regulator GluR (characterized) 45% 99% 414.5 Inositol transport system ATP-binding protein 48% 441.8
D-fructose catabolism frcA med ABC-type sugar transport system, ATP-binding protein; EC 3.6.3.17 (characterized, see rationale) 47% 93% 399.1 Inositol transport system ATP-binding protein 48% 441.8
sucrose catabolism frcA med ABC-type sugar transport system, ATP-binding protein; EC 3.6.3.17 (characterized, see rationale) 47% 93% 399.1 Inositol transport system ATP-binding protein 48% 441.8
myo-inositol catabolism iatA med Inositol transport ATP-binding protein IatA, component of The myoinositol (high affinity)/ D-ribose (low affinity) transporter IatP/IatA/IbpA. The structure of IbpA with myoinositol bound has been solved (characterized) 44% 97% 397.1 Inositol transport system ATP-binding protein 48% 441.8
D-galactose catabolism BPHYT_RS16930 med Arabinose import ATP-binding protein AraG; EC 7.5.2.12 (characterized, see rationale) 43% 96% 395.6 Inositol transport system ATP-binding protein 48% 441.8
L-rhamnose catabolism rhaT' med RhaT, component of Rhamnose porter (Richardson et al., 2004) (Transport activity is dependent on rhamnokinase (RhaK; AAQ92412) activity (Richardson and Oresnik, 2007) This could be an example of group translocation!) (characterized) 43% 97% 395.6 Inositol transport system ATP-binding protein 48% 441.8
L-arabinose catabolism gguA med GguA aka ATU2347 aka AGR_C_4264, component of Multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter (characterized) 42% 98% 380.9 Inositol transport system ATP-binding protein 48% 441.8
D-galactose catabolism gguA med GguA aka ATU2347 aka AGR_C_4264, component of Multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter (characterized) 42% 98% 380.9 Inositol transport system ATP-binding protein 48% 441.8
xylitol catabolism PS417_12065 med D-ribose transporter ATP-binding protein; SubName: Full=Putative xylitol transport system ATP-binding protein; SubName: Full=Sugar ABC transporter ATP-binding protein (characterized, see rationale) 42% 99% 374.4 Inositol transport system ATP-binding protein 48% 441.8
D-galactose catabolism ytfR med galactofuranose ABC transporter putative ATP binding subunit (EC 7.5.2.9) (characterized) 40% 98% 366.7 Inositol transport system ATP-binding protein 48% 441.8
L-arabinose catabolism araG med L-arabinose ABC transporter, ATP-binding protein AraG; EC 3.6.3.17 (characterized) 41% 97% 366.3 Inositol transport system ATP-binding protein 48% 441.8
L-arabinose catabolism araVsh lo ABC transporter related (characterized, see rationale) 39% 99% 372.5 Inositol transport system ATP-binding protein 48% 441.8
D-fructose catabolism fruK lo Fructose import ATP-binding protein FruK; EC 7.5.2.- (characterized) 39% 96% 353.2 Inositol transport system ATP-binding protein 48% 441.8
sucrose catabolism fruK lo Fructose import ATP-binding protein FruK; EC 7.5.2.- (characterized) 39% 96% 353.2 Inositol transport system ATP-binding protein 48% 441.8
2'-deoxyinosine catabolism nupA lo RnsB, component of The (deoxy)ribonucleoside permease; probably takes up all deoxy- and ribonucleosides (cytidine, uridine, adenosine and toxic analogues, fluorocytidine and fluorouridine tested), but not ribose or nucleobases (characterized) 37% 97% 316.2 Inositol transport system ATP-binding protein 48% 441.8

Sequence Analysis Tools

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