Align asparagine synthetase B, glutamine-hydrolyzing; EC 6.3.5.4 (characterized)
to candidate 7025394 Shewana3_2549 asparagine synthetase B (RefSeq)
Query= CharProtDB::CH_002444 (554 letters) >FitnessBrowser__ANA3:7025394 Length = 554 Score = 808 bits (2088), Expect = 0.0 Identities = 392/554 (70%), Positives = 461/554 (83%), Gaps = 1/554 (0%) Query: 1 MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGA 60 MCSIF + DI++DA ELR+ ALE+S+LMRHRGPDWSGIYASD AILAHERL+IVD+ GA Sbjct: 1 MCSIFSILDIQSDAKELRQVALEMSKLMRHRGPDWSGIYASDKAILAHERLAIVDIEHGA 60 Query: 61 QPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQG 120 QPL + + +LAVNGEIYNH+ L+A+ GD+Y +QT SDCEVILALYQE G EFLD L G Sbjct: 61 QPLLTEDGSLILAVNGEIYNHKELKAQLGDKYSYQTNSDCEVILALYQEYGTEFLDKLNG 120 Query: 121 MFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSY 180 +FAF LYD KDAYLIGRDH+GIIPLY G D G YVASEMKAL+PVC+T+ EF G Y Sbjct: 121 IFAFVLYDKAKDAYLIGRDHMGIIPLYTGRDAAGNFYVASEMKALMPVCKTVAEFQPGQY 180 Query: 181 LWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDS 240 L+S GE YY RDW +DAVKDN + ELR ALE +VK LMSDVPYGVLLSGGLDS Sbjct: 181 LYSSIGEPVQYYTRDWQSFDAVKDNGASQEELRDALEAAVKRQLMSDVPYGVLLSGGLDS 240 Query: 241 SIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHF 300 S+ISAIT+ +A RR+ED ++S AWWPQLHSFAVGL G+PDL AA++VA+ +GT+HHEI+F Sbjct: 241 SVISAITQTFAKRRIEDDDQSGAWWPQLHSFAVGLKGAPDLAAAKKVADAIGTIHHEINF 300 Query: 301 TVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLY 360 T QEGLDAI++VIYH+ETYDVTTIRA+TPMYLM+RKIKAMGIKMVLSGEG+DE+FGGYLY Sbjct: 301 TFQEGLDAIKEVIYHLETYDVTTIRAATPMYLMARKIKAMGIKMVLSGEGADELFGGYLY 360 Query: 361 FHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQD 420 FHKAPNA+ HEE VRKL LH++DC RANKAM+AWG+EARVPFLDK+F+DVAMRINP+ Sbjct: 361 FHKAPNAQAFHEELVRKLDKLHLFDCLRANKAMAAWGLEARVPFLDKEFMDVAMRINPEA 420 Query: 421 KMCGNGKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLET 480 KM +G++EKHILR+ FE LP VAWRQKEQFSDGVGYSWID LK AA+QV D QL Sbjct: 421 KMSKDGRIEKHILRQAFEHKLPKEVAWRQKEQFSDGVGYSWIDGLKAHAAEQVDDLQLAN 480 Query: 481 ARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPGGPSVACSSAKAIEWDEAFKKMDD 540 A+FRFPYNTP +KEAY YR FEE +PLPSAAE VPGG SVACS+ +A+ WDE+ + + D Sbjct: 481 AKFRFPYNTPETKEAYFYRCFFEEHYPLPSAAETVPGGKSVACSTPEALAWDESLRGIID 540 Query: 541 PSGRAV-GVHQSAY 553 PSGRAV VH ++Y Sbjct: 541 PSGRAVRSVHAASY 554 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 916 Number of extensions: 27 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 554 Length of database: 554 Length adjustment: 36 Effective length of query: 518 Effective length of database: 518 Effective search space: 268324 Effective search space used: 268324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate 7025394 Shewana3_2549 (asparagine synthetase B (RefSeq))
to HMM TIGR01536 (asnB: asparagine synthase (glutamine-hydrolyzing) (EC 6.3.5.4))
../bin/blast/fastacmd -i /tmp/list.4041.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4041.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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