Align 3-dehydroquinate synthase (EC 4.2.3.4) (characterized)
to candidate 7026761 Shewana3_3893 3-dehydroquinate synthase (RefSeq)
Query= BRENDA::P07639 (362 letters) >FitnessBrowser__ANA3:7026761 Length = 359 Score = 429 bits (1102), Expect = e-125 Identities = 215/358 (60%), Positives = 270/358 (75%), Gaps = 2/358 (0%) Query: 2 ERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG 61 ++I V LGERSYPI I L ++ + +++++VTNET+APLYL +++ + G Sbjct: 3 KQIQVDLGERSYPIYIGQSLMSDGETLSRYLLKKRILIVTNETVAPLYLKQIQDTMASFG 62 Query: 62 VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRG 121 V SVILPDGEQ+K L LD++FTALLQ+ +GRD+ LVALGGGV+GD+TGFAAA YQRG Sbjct: 63 -EVTSVILPDGEQFKDLTHLDSIFTALLQRNYGRDSVLVALGGGVIGDMTGFAAACYQRG 121 Query: 122 VRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASG 181 V FIQ+PTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQP V++D +CL+TLP RE A+G Sbjct: 122 VDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPQIVIIDTECLQTLPAREFAAG 181 Query: 182 LAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEVVAADERETGLRA 241 +AEVIKYGI+ D FF WLE N+ AL LD A+ Y I RCCE+KA+VV+ DE E G+RA Sbjct: 182 MAEVIKYGIMWDAEFFQWLENNVQALKSLDTQALVYAISRCCEIKADVVSQDETEQGVRA 241 Query: 242 LLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLKRAG 301 LLNLGHTFGHAIEAEMGYGNWLHGEAVAAG V+AA+T++ +G + +RI+ L Sbjct: 242 LLNLGHTFGHAIEAEMGYGNWLHGEAVAAGTVLAAQTAKSMGLIDESIVRRIVQLFHAFD 301 Query: 302 LPVNGPREMSAQAYLPHMLRDKKVLAGEMRLILPLAIGKSEVRSGVSHELVLNAIADC 359 LPV P M +++ HM RDKKVL G++RL+LP AIG+++V S V E L + C Sbjct: 302 LPVTAPESMDFDSFIKHMRRDKKVLGGQIRLVLPTAIGRADVFSQVP-ESTLEQVICC 358 Lambda K H 0.320 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 342 Number of extensions: 7 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 362 Length of database: 359 Length adjustment: 29 Effective length of query: 333 Effective length of database: 330 Effective search space: 109890 Effective search space used: 109890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 7026761 Shewana3_3893 (3-dehydroquinate synthase (RefSeq))
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))
../bin/blast/fastacmd -i /tmp/list.3034.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3034.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.